miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26556 3' -56 NC_005357.1 + 42257 0.72 0.245979
Target:  5'- cGCCGGcauucUGCGCGCgGCAGCUugGGCa- -3'
miRNA:   3'- cUGGCU-----ACGUGCG-CGUUGGugUCGaa -5'
26556 3' -56 NC_005357.1 + 41318 0.72 0.252646
Target:  5'- gGGCCGAUGCGCgacaugccGCGCGA-CACGGCc- -3'
miRNA:   3'- -CUGGCUACGUG--------CGCGUUgGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 41074 0.69 0.361915
Target:  5'- cGCCgGAUGCGCaaggcCGcCGACCACGGCUUc -3'
miRNA:   3'- cUGG-CUACGUGc----GC-GUUGGUGUCGAA- -5'
26556 3' -56 NC_005357.1 + 41045 0.77 0.108636
Target:  5'- aACCGuUGUGCGCGUGGCCGCGGCg- -3'
miRNA:   3'- cUGGCuACGUGCGCGUUGGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 40079 0.67 0.457943
Target:  5'- aGGCCGAauugcggcGCACGCGC-GCCAC-GCa- -3'
miRNA:   3'- -CUGGCUa-------CGUGCGCGuUGGUGuCGaa -5'
26556 3' -56 NC_005357.1 + 39588 0.7 0.327622
Target:  5'- cGCUGGUGCugGCGCcgcugcgcguGGCCGCgAGCa- -3'
miRNA:   3'- cUGGCUACGugCGCG----------UUGGUG-UCGaa -5'
26556 3' -56 NC_005357.1 + 38860 0.7 0.344462
Target:  5'- gGAUCGGUGUACGCcCAGCCcGCuGCUg -3'
miRNA:   3'- -CUGGCUACGUGCGcGUUGG-UGuCGAa -5'
26556 3' -56 NC_005357.1 + 38666 0.66 0.554803
Target:  5'- cGACCGAgGCuACGUcCAGCgGCGGCa- -3'
miRNA:   3'- -CUGGCUaCG-UGCGcGUUGgUGUCGaa -5'
26556 3' -56 NC_005357.1 + 37793 0.68 0.447725
Target:  5'- uGGCCGAcGCA-GCGUGGCC-CAGCa- -3'
miRNA:   3'- -CUGGCUaCGUgCGCGUUGGuGUCGaa -5'
26556 3' -56 NC_005357.1 + 35336 0.67 0.489318
Target:  5'- cGugCGcGUGgGCGCGCcguggguaGGCCGCGGCg- -3'
miRNA:   3'- -CugGC-UACgUGCGCG--------UUGGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 34818 0.68 0.437634
Target:  5'- -uCCGgcGC-UGCGCGACCACGuGCUg -3'
miRNA:   3'- cuGGCuaCGuGCGCGUUGGUGU-CGAa -5'
26556 3' -56 NC_005357.1 + 34373 0.66 0.510783
Target:  5'- cGACCuggGCGCGCGUcaugGACgGCGGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCG----UUGgUGUCGaa -5'
26556 3' -56 NC_005357.1 + 34325 0.66 0.521662
Target:  5'- uGGCCGA-GCACGUGCAgaaguacaucgACUACGuGCg- -3'
miRNA:   3'- -CUGGCUaCGUGCGCGU-----------UGGUGU-CGaa -5'
26556 3' -56 NC_005357.1 + 34265 0.69 0.361915
Target:  5'- -uCCGGgcGCACGCGCAGggaCGCAGCg- -3'
miRNA:   3'- cuGGCUa-CGUGCGCGUUg--GUGUCGaa -5'
26556 3' -56 NC_005357.1 + 34092 0.67 0.489318
Target:  5'- uGGCaUGAgcacGCACGCGCAACUuuccccgaGCAGCg- -3'
miRNA:   3'- -CUG-GCUa---CGUGCGCGUUGG--------UGUCGaa -5'
26556 3' -56 NC_005357.1 + 33754 0.67 0.489318
Target:  5'- cGCCGAgGUGCGCGCGGCaCGCAauGCc- -3'
miRNA:   3'- cUGGCUaCGUGCGCGUUG-GUGU--CGaa -5'
26556 3' -56 NC_005357.1 + 33579 0.68 0.427676
Target:  5'- cGACCGAgGCcaACGCGCuGGCCcgcguuGCGGCUg -3'
miRNA:   3'- -CUGGCUaCG--UGCGCG-UUGG------UGUCGAa -5'
26556 3' -56 NC_005357.1 + 32920 0.66 0.54812
Target:  5'- cGGCC--UGCACgGCugcuguucggccaggGCGACCACGGCUg -3'
miRNA:   3'- -CUGGcuACGUG-CG---------------CGUUGGUGUCGAa -5'
26556 3' -56 NC_005357.1 + 32557 0.67 0.499999
Target:  5'- uGGCCGAgaaGCAgCGCGCcgguGCCAC-GCUc -3'
miRNA:   3'- -CUGGCUa--CGU-GCGCGu---UGGUGuCGAa -5'
26556 3' -56 NC_005357.1 + 31956 0.7 0.30352
Target:  5'- gGGCCGGUGC-UGCGCGAcuuCCAgGGCg- -3'
miRNA:   3'- -CUGGCUACGuGCGCGUU---GGUgUCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.