miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26556 3' -56 NC_005357.1 + 34092 0.67 0.489318
Target:  5'- uGGCaUGAgcacGCACGCGCAACUuuccccgaGCAGCg- -3'
miRNA:   3'- -CUG-GCUa---CGUGCGCGUUGG--------UGUCGaa -5'
26556 3' -56 NC_005357.1 + 35336 0.67 0.489318
Target:  5'- cGugCGcGUGgGCGCGCcguggguaGGCCGCGGCg- -3'
miRNA:   3'- -CugGC-UACgUGCGCG--------UUGGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 33754 0.67 0.489318
Target:  5'- cGCCGAgGUGCGCGCGGCaCGCAauGCc- -3'
miRNA:   3'- cUGGCUaCGUGCGCGUUG-GUGU--CGaa -5'
26556 3' -56 NC_005357.1 + 23176 0.67 0.478744
Target:  5'- cGGCCcccUGCugGUGCGACaGCAGCa- -3'
miRNA:   3'- -CUGGcu-ACGugCGCGUUGgUGUCGaa -5'
26556 3' -56 NC_005357.1 + 9507 0.67 0.478744
Target:  5'- uGGCCGAacagccagccgUGCAgGcCGUGGCCGCAGUUc -3'
miRNA:   3'- -CUGGCU-----------ACGUgC-GCGUUGGUGUCGAa -5'
26556 3' -56 NC_005357.1 + 22711 0.67 0.478744
Target:  5'- aGGgCGAUGCGCgGCGCcuCUauGCAGCUUc -3'
miRNA:   3'- -CUgGCUACGUG-CGCGuuGG--UGUCGAA- -5'
26556 3' -56 NC_005357.1 + 20856 0.67 0.478744
Target:  5'- uGACCGAcugcacgacgGCGCGCGCcgugauuucGACCACGGa-- -3'
miRNA:   3'- -CUGGCUa---------CGUGCGCG---------UUGGUGUCgaa -5'
26556 3' -56 NC_005357.1 + 40079 0.67 0.457943
Target:  5'- aGGCCGAauugcggcGCACGCGC-GCCAC-GCa- -3'
miRNA:   3'- -CUGGCUa-------CGUGCGCGuUGGUGuCGaa -5'
26556 3' -56 NC_005357.1 + 16255 0.68 0.447725
Target:  5'- uGGCgGAUGgcguuggccuCGCGCGCGGCCACccggaaGGCUa -3'
miRNA:   3'- -CUGgCUAC----------GUGCGCGUUGGUG------UCGAa -5'
26556 3' -56 NC_005357.1 + 37793 0.68 0.447725
Target:  5'- uGGCCGAcGCA-GCGUGGCC-CAGCa- -3'
miRNA:   3'- -CUGGCUaCGUgCGCGUUGGuGUCGaa -5'
26556 3' -56 NC_005357.1 + 7255 0.68 0.447725
Target:  5'- gGGCCGAUGU-CGC-CGGCCuuguGCAGCUUc -3'
miRNA:   3'- -CUGGCUACGuGCGcGUUGG----UGUCGAA- -5'
26556 3' -56 NC_005357.1 + 939 0.68 0.44671
Target:  5'- gGGCCGAucUGUccguccuGCGCGguGCCcacgGCAGCUUg -3'
miRNA:   3'- -CUGGCU--ACG-------UGCGCguUGG----UGUCGAA- -5'
26556 3' -56 NC_005357.1 + 23582 0.68 0.44671
Target:  5'- gGGCCGcccggccuucuacAUGC-CGCGCAAaauUCGCAGCUUc -3'
miRNA:   3'- -CUGGC-------------UACGuGCGCGUU---GGUGUCGAA- -5'
26556 3' -56 NC_005357.1 + 34818 0.68 0.437634
Target:  5'- -uCCGgcGC-UGCGCGACCACGuGCUg -3'
miRNA:   3'- cuGGCuaCGuGCGCGUUGGUGU-CGAa -5'
26556 3' -56 NC_005357.1 + 819 0.68 0.437634
Target:  5'- uGGCUGGgcuugaGCGCGCGCAGagACAGCg- -3'
miRNA:   3'- -CUGGCUa-----CGUGCGCGUUggUGUCGaa -5'
26556 3' -56 NC_005357.1 + 33579 0.68 0.427676
Target:  5'- cGACCGAgGCcaACGCGCuGGCCcgcguuGCGGCUg -3'
miRNA:   3'- -CUGGCUaCG--UGCGCG-UUGG------UGUCGAa -5'
26556 3' -56 NC_005357.1 + 4363 0.68 0.408168
Target:  5'- cGGCCGGacgGCAgGCGgAugCGCAGCc- -3'
miRNA:   3'- -CUGGCUa--CGUgCGCgUugGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 13863 0.68 0.408168
Target:  5'- uGGCCGAcgUGCGCGcCGCGaugGCCgGCGGCc- -3'
miRNA:   3'- -CUGGCU--ACGUGC-GCGU---UGG-UGUCGaa -5'
26556 3' -56 NC_005357.1 + 18710 0.68 0.398625
Target:  5'- cACCGAgGCACuggccCGCGACCugGGCg- -3'
miRNA:   3'- cUGGCUaCGUGc----GCGUUGGugUCGaa -5'
26556 3' -56 NC_005357.1 + 25128 0.68 0.398625
Target:  5'- uGCCGGaaUGgAUGCGCGcCCGCGGCg- -3'
miRNA:   3'- cUGGCU--ACgUGCGCGUuGGUGUCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.