miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26557 3' -55.4 NC_005357.1 + 24301 0.66 0.644406
Target:  5'- aGCCggGCgacaaGUUCGACGUACCGgACg-- -3'
miRNA:   3'- -CGGuaCG-----CGAGCUGUAUGGCgUGgag -5'
26557 3' -55.4 NC_005357.1 + 40480 0.66 0.644406
Target:  5'- gGCCGcGCGCUCGACcagaacCCGCAg--- -3'
miRNA:   3'- -CGGUaCGCGAGCUGuau---GGCGUggag -5'
26557 3' -55.4 NC_005357.1 + 41698 0.66 0.644406
Target:  5'- gGCCG-GCGUugUCGGCAaaGCCGCcCCUa -3'
miRNA:   3'- -CGGUaCGCG--AGCUGUa-UGGCGuGGAg -5'
26557 3' -55.4 NC_005357.1 + 36165 0.66 0.644406
Target:  5'- uGCCcaGCGCgcaGAUcaACCGCACCg- -3'
miRNA:   3'- -CGGuaCGCGag-CUGuaUGGCGUGGag -5'
26557 3' -55.4 NC_005357.1 + 4189 0.66 0.643281
Target:  5'- aGCCAguggGCGCcgaaaaguuggaaUCGGCGcgcACCGUGCCaUCg -3'
miRNA:   3'- -CGGUa---CGCG-------------AGCUGUa--UGGCGUGG-AG- -5'
26557 3' -55.4 NC_005357.1 + 23586 0.66 0.633153
Target:  5'- cGCCcgGCcUUCuACAUGCCGCGCa-- -3'
miRNA:   3'- -CGGuaCGcGAGcUGUAUGGCGUGgag -5'
26557 3' -55.4 NC_005357.1 + 7292 0.66 0.633153
Target:  5'- gGCCGUaGUGCUCG-CGgAUgGCGCCgUCg -3'
miRNA:   3'- -CGGUA-CGCGAGCuGUaUGgCGUGG-AG- -5'
26557 3' -55.4 NC_005357.1 + 15345 0.66 0.633153
Target:  5'- aGCCGUaGgGUUCgGACGUgcGCUGCuucACCUCg -3'
miRNA:   3'- -CGGUA-CgCGAG-CUGUA--UGGCG---UGGAG- -5'
26557 3' -55.4 NC_005357.1 + 19518 0.66 0.621899
Target:  5'- gGUCuUGUGCUCgGugAaACCGUugGCCUCg -3'
miRNA:   3'- -CGGuACGCGAG-CugUaUGGCG--UGGAG- -5'
26557 3' -55.4 NC_005357.1 + 15573 0.66 0.621899
Target:  5'- cGCCGUcagugacgacGCGCUgCGGaugcACCGCGCCaUCg -3'
miRNA:   3'- -CGGUA----------CGCGA-GCUgua-UGGCGUGG-AG- -5'
26557 3' -55.4 NC_005357.1 + 2837 0.66 0.621899
Target:  5'- gGCCAcGCGCagCGGC--GCCaGCACCa- -3'
miRNA:   3'- -CGGUaCGCGa-GCUGuaUGG-CGUGGag -5'
26557 3' -55.4 NC_005357.1 + 36883 0.66 0.610655
Target:  5'- aGCCAUGCGCgugaUUGACcagaaGCUGCcgGCCUg -3'
miRNA:   3'- -CGGUACGCG----AGCUGua---UGGCG--UGGAg -5'
26557 3' -55.4 NC_005357.1 + 484 0.66 0.610655
Target:  5'- gGUCGgaUGC-CUCGGCAgcaUACUGCGCCg- -3'
miRNA:   3'- -CGGU--ACGcGAGCUGU---AUGGCGUGGag -5'
26557 3' -55.4 NC_005357.1 + 28115 0.66 0.600551
Target:  5'- aGCCAagGCGCgcgccaguucagcaaCGACGUggGCCGCAUCg- -3'
miRNA:   3'- -CGGUa-CGCGa--------------GCUGUA--UGGCGUGGag -5'
26557 3' -55.4 NC_005357.1 + 10067 0.66 0.59943
Target:  5'- gGCCGggGC-CUCGGCGgcgACCGCagcgACCUg -3'
miRNA:   3'- -CGGUa-CGcGAGCUGUa--UGGCG----UGGAg -5'
26557 3' -55.4 NC_005357.1 + 37086 0.66 0.59943
Target:  5'- gGCCAcGCaGCgCGAugcCAUGCUGCGCCa- -3'
miRNA:   3'- -CGGUaCG-CGaGCU---GUAUGGCGUGGag -5'
26557 3' -55.4 NC_005357.1 + 25604 0.66 0.59943
Target:  5'- aCUAUGCGCcgCGugA-ACUGCGCCg- -3'
miRNA:   3'- cGGUACGCGa-GCugUaUGGCGUGGag -5'
26557 3' -55.4 NC_005357.1 + 24044 0.66 0.588234
Target:  5'- cGCCAccgGCGCcaUCGGCAagGCCa-ACCUCg -3'
miRNA:   3'- -CGGUa--CGCG--AGCUGUa-UGGcgUGGAG- -5'
26557 3' -55.4 NC_005357.1 + 10497 0.66 0.588234
Target:  5'- aGUCGUGCGUgUCGA---GCaGCGCCUCg -3'
miRNA:   3'- -CGGUACGCG-AGCUguaUGgCGUGGAG- -5'
26557 3' -55.4 NC_005357.1 + 17998 0.67 0.577077
Target:  5'- gGCCGcGCGCggcacCGACAaaucgggccgGCUGCGCUUCu -3'
miRNA:   3'- -CGGUaCGCGa----GCUGUa---------UGGCGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.