Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26557 | 5' | -53.2 | NC_005357.1 | + | 26576 | 0.68 | 0.635967 |
Target: 5'- ---cGGcGCGugGCACcagcacgacacgGACGGCGUGu -3' miRNA: 3'- guuaCCaCGCugCGUG------------CUGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 25046 | 0.68 | 0.635967 |
Target: 5'- ---cGGUGCGuCgGCGCGAUgcaGGCAUAc -3' miRNA: 3'- guuaCCACGCuG-CGUGCUG---CCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 13008 | 0.68 | 0.635967 |
Target: 5'- ----cGUGCGA-GCGCGugGGCAa-- -3' miRNA: 3'- guuacCACGCUgCGUGCugCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 10045 | 0.68 | 0.635967 |
Target: 5'- ---cGGUGCuGGCuuccuGCugGGCGGCcgGGg -3' miRNA: 3'- guuaCCACG-CUG-----CGugCUGCCGuaUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 27581 | 0.67 | 0.670053 |
Target: 5'- ---aGcGUGCGGCGCugGccgccaACGGCAUc- -3' miRNA: 3'- guuaC-CACGCUGCGugC------UGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 13573 | 0.67 | 0.680227 |
Target: 5'- -cGUGGcGCGGCGCugGGacagcuuCGGCAa-- -3' miRNA: 3'- guUACCaCGCUGCGugCU-------GCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 22077 | 0.67 | 0.681355 |
Target: 5'- ---cGGU-CGGCGCGCGGCucgauGGCGUGa -3' miRNA: 3'- guuaCCAcGCUGCGUGCUG-----CCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 4369 | 0.67 | 0.681355 |
Target: 5'- ---cGGUGCG-CGUgaagGCGACGGCcgAc -3' miRNA: 3'- guuaCCACGCuGCG----UGCUGCCGuaUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 2374 | 0.67 | 0.692606 |
Target: 5'- gCAAcGGUuCGAgGCGC-ACGGCAUGGc -3' miRNA: 3'- -GUUaCCAcGCUgCGUGcUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 24549 | 0.67 | 0.692606 |
Target: 5'- -cGUGGUcGCGcaGCGCgGCGAUGGCGa-- -3' miRNA: 3'- guUACCA-CGC--UGCG-UGCUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 30844 | 0.67 | 0.692606 |
Target: 5'- ---cGGccagccgGCGGCcCugGGCGGCAUGGc -3' miRNA: 3'- guuaCCa------CGCUGcGugCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 28762 | 0.67 | 0.713801 |
Target: 5'- ---cGGUGCGcuucucgGCGCGC-ACGGCGUc- -3' miRNA: 3'- guuaCCACGC-------UGCGUGcUGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26363 | 0.67 | 0.714909 |
Target: 5'- ---cGGcGCcGCGCGCGGCGGCc--- -3' miRNA: 3'- guuaCCaCGcUGCGUGCUGCCGuauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 27628 | 0.66 | 0.725935 |
Target: 5'- aCGAUGG-GCcgGugGUugGuCGGCAUGa -3' miRNA: 3'- -GUUACCaCG--CugCGugCuGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 16746 | 0.66 | 0.725935 |
Target: 5'- -cGUGGcgGUcACGCuCGugGGCGUAGc -3' miRNA: 3'- guUACCa-CGcUGCGuGCugCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 16067 | 0.66 | 0.725935 |
Target: 5'- -cGUGGccGCcGCGCGCGGCGcCGUAGa -3' miRNA: 3'- guUACCa-CGcUGCGUGCUGCcGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 11197 | 0.66 | 0.736862 |
Target: 5'- uGAUGGUGCGgucaaugccGCGCAUGACcGCc--- -3' miRNA: 3'- gUUACCACGC---------UGCGUGCUGcCGuauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 15016 | 0.66 | 0.747676 |
Target: 5'- ---cGGUGCGccagGCGCGCGACGacuacaagagcGaCAUGGa -3' miRNA: 3'- guuaCCACGC----UGCGUGCUGC-----------C-GUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 18322 | 0.66 | 0.747676 |
Target: 5'- ---cGGcaguaGCGGCGCAgcuugGugGGCAUAGg -3' miRNA: 3'- guuaCCa----CGCUGCGUg----CugCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 31433 | 0.66 | 0.758364 |
Target: 5'- ------gGCGACGcCACGaucuGCGGCGUGGu -3' miRNA: 3'- guuaccaCGCUGC-GUGC----UGCCGUAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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