Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26557 | 5' | -53.2 | NC_005357.1 | + | 41219 | 0.68 | 0.601845 |
Target: 5'- gCAAUGG-GuCGAaaagGCGACGGCGUAGa -3' miRNA: 3'- -GUUACCaC-GCUgcg-UGCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 38751 | 0.71 | 0.449597 |
Target: 5'- -cGUGGUG-GAuuCGCACGAaGGCGUGGa -3' miRNA: 3'- guUACCACgCU--GCGUGCUgCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 36447 | 0.68 | 0.613205 |
Target: 5'- ------aGCGACGCA-GACGGUGUGGa -3' miRNA: 3'- guuaccaCGCUGCGUgCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 35741 | 0.68 | 0.624582 |
Target: 5'- ---aGGUGUGcCuGCACGAUGGCGa-- -3' miRNA: 3'- guuaCCACGCuG-CGUGCUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 34044 | 0.7 | 0.531294 |
Target: 5'- -cGUGGgcgGCGAUucucgaagauucgaGCGCGGCGGCGcAGg -3' miRNA: 3'- guUACCa--CGCUG--------------CGUGCUGCCGUaUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 31433 | 0.66 | 0.758364 |
Target: 5'- ------gGCGACGcCACGaucuGCGGCGUGGu -3' miRNA: 3'- guuaccaCGCUGC-GUGC----UGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 30844 | 0.67 | 0.692606 |
Target: 5'- ---cGGccagccgGCGGCcCugGGCGGCAUGGc -3' miRNA: 3'- guuaCCa------CGCUGcGugCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 29951 | 0.84 | 0.074518 |
Target: 5'- aGGUGGUgcuugucgucGCGGCGCACGACGGCcUGGa -3' miRNA: 3'- gUUACCA----------CGCUGCGUGCUGCCGuAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 28762 | 0.67 | 0.713801 |
Target: 5'- ---cGGUGCGcuucucgGCGCGC-ACGGCGUc- -3' miRNA: 3'- guuaCCACGC-------UGCGUGcUGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 27628 | 0.66 | 0.725935 |
Target: 5'- aCGAUGG-GCcgGugGUugGuCGGCAUGa -3' miRNA: 3'- -GUUACCaCG--CugCGugCuGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 27581 | 0.67 | 0.670053 |
Target: 5'- ---aGcGUGCGGCGCugGccgccaACGGCAUc- -3' miRNA: 3'- guuaC-CACGCUGCGugC------UGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26952 | 0.69 | 0.579218 |
Target: 5'- ---cGGUGgCGAUGCAacugGACGGCAg-- -3' miRNA: 3'- guuaCCAC-GCUGCGUg---CUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26576 | 0.68 | 0.635967 |
Target: 5'- ---cGGcGCGugGCACcagcacgacacgGACGGCGUGu -3' miRNA: 3'- guuaCCaCGCugCGUG------------CUGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26363 | 0.67 | 0.714909 |
Target: 5'- ---cGGcGCcGCGCGCGGCGGCc--- -3' miRNA: 3'- guuaCCaCGcUGCGUGCUGCCGuauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 25782 | 0.74 | 0.312954 |
Target: 5'- aCGAUGGccGCGAUGCGCG-CGGCGc-- -3' miRNA: 3'- -GUUACCa-CGCUGCGUGCuGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 25046 | 0.68 | 0.635967 |
Target: 5'- ---cGGUGCGuCgGCGCGAUgcaGGCAUAc -3' miRNA: 3'- guuaCCACGCuG-CGUGCUG---CCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 24549 | 0.67 | 0.692606 |
Target: 5'- -cGUGGUcGCGcaGCGCgGCGAUGGCGa-- -3' miRNA: 3'- guUACCA-CGC--UGCG-UGCUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 24438 | 0.68 | 0.624582 |
Target: 5'- ---cGGUGCcGCGCGCGGCcucGGCGa-- -3' miRNA: 3'- guuaCCACGcUGCGUGCUG---CCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 23452 | 0.68 | 0.624582 |
Target: 5'- gGAUGGUucGCG-CGUacACGcCGGCGUGGa -3' miRNA: 3'- gUUACCA--CGCuGCG--UGCuGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 22153 | 0.69 | 0.590513 |
Target: 5'- --cUGGUGCGG-GCaACGACGGCc--- -3' miRNA: 3'- guuACCACGCUgCG-UGCUGCCGuauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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