miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26557 5' -53.2 NC_005357.1 + 22077 0.67 0.681355
Target:  5'- ---cGGU-CGGCGCGCGGCucgauGGCGUGa -3'
miRNA:   3'- guuaCCAcGCUGCGUGCUG-----CCGUAUc -5'
26557 5' -53.2 NC_005357.1 + 19041 0.68 0.624582
Target:  5'- --cUGGUaGCGGcCGC-CGGCGGCGUc- -3'
miRNA:   3'- guuACCA-CGCU-GCGuGCUGCCGUAuc -5'
26557 5' -53.2 NC_005357.1 + 18461 0.74 0.321013
Target:  5'- ---cGGUcGCGGCGC-CGGCGGCGUc- -3'
miRNA:   3'- guuaCCA-CGCUGCGuGCUGCCGUAuc -5'
26557 5' -53.2 NC_005357.1 + 18322 0.66 0.747676
Target:  5'- ---cGGcaguaGCGGCGCAgcuugGugGGCAUAGg -3'
miRNA:   3'- guuaCCa----CGCUGCGUg----CugCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 17003 0.66 0.768915
Target:  5'- ----cGUGCaGCGCAUGACGGaaauCAUGGg -3'
miRNA:   3'- guuacCACGcUGCGUGCUGCC----GUAUC- -5'
26557 5' -53.2 NC_005357.1 + 16746 0.66 0.725935
Target:  5'- -cGUGGcgGUcACGCuCGugGGCGUAGc -3'
miRNA:   3'- guUACCa-CGcUGCGuGCugCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 16067 0.66 0.725935
Target:  5'- -cGUGGccGCcGCGCGCGGCGcCGUAGa -3'
miRNA:   3'- guUACCa-CGcUGCGUGCUGCcGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 15773 1.09 0.001115
Target:  5'- cCAAUGGUGCGACGCACGACGGCAUAGa -3'
miRNA:   3'- -GUUACCACGCUGCGUGCUGCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 15016 0.66 0.747676
Target:  5'- ---cGGUGCGccagGCGCGCGACGacuacaagagcGaCAUGGa -3'
miRNA:   3'- guuaCCACGC----UGCGUGCUGC-----------C-GUAUC- -5'
26557 5' -53.2 NC_005357.1 + 14960 0.74 0.329225
Target:  5'- -cGUGGUGCGugGCggcGCGcUGGCAUAc -3'
miRNA:   3'- guUACCACGCugCG---UGCuGCCGUAUc -5'
26557 5' -53.2 NC_005357.1 + 13573 0.67 0.680227
Target:  5'- -cGUGGcGCGGCGCugGGacagcuuCGGCAa-- -3'
miRNA:   3'- guUACCaCGCUGCGugCU-------GCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 13008 0.68 0.635967
Target:  5'- ----cGUGCGA-GCGCGugGGCAa-- -3'
miRNA:   3'- guuacCACGCUgCGUGCugCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 12297 0.66 0.768915
Target:  5'- ---cGGUGC-AgGC-CGGCGGCGUGu -3'
miRNA:   3'- guuaCCACGcUgCGuGCUGCCGUAUc -5'
26557 5' -53.2 NC_005357.1 + 12131 0.66 0.768915
Target:  5'- --uUGGcGCGACGCGCcACGcgcugcgcuuccGCGUAGg -3'
miRNA:   3'- guuACCaCGCUGCGUGcUGC------------CGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 11197 0.66 0.736862
Target:  5'- uGAUGGUGCGgucaaugccGCGCAUGACcGCc--- -3'
miRNA:   3'- gUUACCACGC---------UGCGUGCUGcCGuauc -5'
26557 5' -53.2 NC_005357.1 + 10881 0.73 0.354785
Target:  5'- ---cGGcGCGAUGCGCG-CGGCGUAu -3'
miRNA:   3'- guuaCCaCGCUGCGUGCuGCCGUAUc -5'
26557 5' -53.2 NC_005357.1 + 10045 0.68 0.635967
Target:  5'- ---cGGUGCuGGCuuccuGCugGGCGGCcgGGg -3'
miRNA:   3'- guuaCCACG-CUG-----CGugCUGCCGuaUC- -5'
26557 5' -53.2 NC_005357.1 + 9333 0.74 0.312954
Target:  5'- ---cGGcGCGGCGgGCGGCGGCAUc- -3'
miRNA:   3'- guuaCCaCGCUGCgUGCUGCCGUAuc -5'
26557 5' -53.2 NC_005357.1 + 9213 0.7 0.523621
Target:  5'- ---cGGcGCGGCGCACGuucuGCGGCGc-- -3'
miRNA:   3'- guuaCCaCGCUGCGUGC----UGCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 6206 0.7 0.523621
Target:  5'- ---aGGUGaCGGCGCGCGGCuccuGGuCGUGGu -3'
miRNA:   3'- guuaCCAC-GCUGCGUGCUG----CC-GUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.