miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26557 5' -53.2 NC_005357.1 + 38751 0.71 0.449597
Target:  5'- -cGUGGUG-GAuuCGCACGAaGGCGUGGa -3'
miRNA:   3'- guUACCACgCU--GCGUGCUgCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 9213 0.7 0.523621
Target:  5'- ---cGGcGCGGCGCACGuucuGCGGCGc-- -3'
miRNA:   3'- guuaCCaCGCUGCGUGC----UGCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 34044 0.7 0.531294
Target:  5'- -cGUGGgcgGCGAUucucgaagauucgaGCGCGGCGGCGcAGg -3'
miRNA:   3'- guUACCa--CGCUG--------------CGUGCUGCCGUaUC- -5'
26557 5' -53.2 NC_005357.1 + 41219 0.68 0.601845
Target:  5'- gCAAUGG-GuCGAaaagGCGACGGCGUAGa -3'
miRNA:   3'- -GUUACCaC-GCUgcg-UGCUGCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 19041 0.68 0.624582
Target:  5'- --cUGGUaGCGGcCGC-CGGCGGCGUc- -3'
miRNA:   3'- guuACCA-CGCU-GCGuGCUGCCGUAuc -5'
26557 5' -53.2 NC_005357.1 + 13008 0.68 0.635967
Target:  5'- ----cGUGCGA-GCGCGugGGCAa-- -3'
miRNA:   3'- guuacCACGCUgCGUGCugCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 27581 0.67 0.670053
Target:  5'- ---aGcGUGCGGCGCugGccgccaACGGCAUc- -3'
miRNA:   3'- guuaC-CACGCUGCGugC------UGCCGUAuc -5'
26557 5' -53.2 NC_005357.1 + 13573 0.67 0.680227
Target:  5'- -cGUGGcGCGGCGCugGGacagcuuCGGCAa-- -3'
miRNA:   3'- guUACCaCGCUGCGugCU-------GCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 30844 0.67 0.692606
Target:  5'- ---cGGccagccgGCGGCcCugGGCGGCAUGGc -3'
miRNA:   3'- guuaCCa------CGCUGcGugCUGCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 2374 0.67 0.692606
Target:  5'- gCAAcGGUuCGAgGCGC-ACGGCAUGGc -3'
miRNA:   3'- -GUUaCCAcGCUgCGUGcUGCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 26363 0.67 0.714909
Target:  5'- ---cGGcGCcGCGCGCGGCGGCc--- -3'
miRNA:   3'- guuaCCaCGcUGCGUGCUGCCGuauc -5'
26557 5' -53.2 NC_005357.1 + 10045 0.68 0.635967
Target:  5'- ---cGGUGCuGGCuuccuGCugGGCGGCcgGGg -3'
miRNA:   3'- guuaCCACG-CUG-----CGugCUGCCGuaUC- -5'
26557 5' -53.2 NC_005357.1 + 26576 0.68 0.635967
Target:  5'- ---cGGcGCGugGCACcagcacgacacgGACGGCGUGu -3'
miRNA:   3'- guuaCCaCGCugCGUG------------CUGCCGUAUc -5'
26557 5' -53.2 NC_005357.1 + 25046 0.68 0.635967
Target:  5'- ---cGGUGCGuCgGCGCGAUgcaGGCAUAc -3'
miRNA:   3'- guuaCCACGCuG-CGUGCUG---CCGUAUc -5'
26557 5' -53.2 NC_005357.1 + 5616 0.68 0.613205
Target:  5'- ---gGGUGCGuuuCGCGCGugGcGCGg-- -3'
miRNA:   3'- guuaCCACGCu--GCGUGCugC-CGUauc -5'
26557 5' -53.2 NC_005357.1 + 36447 0.68 0.613205
Target:  5'- ------aGCGACGCA-GACGGUGUGGa -3'
miRNA:   3'- guuaccaCGCUGCGUgCUGCCGUAUC- -5'
26557 5' -53.2 NC_005357.1 + 22153 0.69 0.590513
Target:  5'- --cUGGUGCGG-GCaACGACGGCc--- -3'
miRNA:   3'- guuACCACGCUgCG-UGCUGCCGuauc -5'
26557 5' -53.2 NC_005357.1 + 26952 0.69 0.579218
Target:  5'- ---cGGUGgCGAUGCAacugGACGGCAg-- -3'
miRNA:   3'- guuaCCAC-GCUGCGUg---CUGCCGUauc -5'
26557 5' -53.2 NC_005357.1 + 6206 0.7 0.523621
Target:  5'- ---aGGUGaCGGCGCGCGGCuccuGGuCGUGGu -3'
miRNA:   3'- guuaCCAC-GCUGCGUGCUG----CC-GUAUC- -5'
26557 5' -53.2 NC_005357.1 + 17003 0.66 0.768915
Target:  5'- ----cGUGCaGCGCAUGACGGaaauCAUGGg -3'
miRNA:   3'- guuacCACGcUGCGUGCUGCC----GUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.