Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26557 | 5' | -53.2 | NC_005357.1 | + | 14960 | 0.74 | 0.329225 |
Target: 5'- -cGUGGUGCGugGCggcGCGcUGGCAUAc -3' miRNA: 3'- guUACCACGCugCG---UGCuGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 13573 | 0.67 | 0.680227 |
Target: 5'- -cGUGGcGCGGCGCugGGacagcuuCGGCAa-- -3' miRNA: 3'- guUACCaCGCUGCGugCU-------GCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 10045 | 0.68 | 0.635967 |
Target: 5'- ---cGGUGCuGGCuuccuGCugGGCGGCcgGGg -3' miRNA: 3'- guuaCCACG-CUG-----CGugCUGCCGuaUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26576 | 0.68 | 0.635967 |
Target: 5'- ---cGGcGCGugGCACcagcacgacacgGACGGCGUGu -3' miRNA: 3'- guuaCCaCGCugCGUG------------CUGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 5616 | 0.68 | 0.613205 |
Target: 5'- ---gGGUGCGuuuCGCGCGugGcGCGg-- -3' miRNA: 3'- guuaCCACGCu--GCGUGCugC-CGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 36447 | 0.68 | 0.613205 |
Target: 5'- ------aGCGACGCA-GACGGUGUGGa -3' miRNA: 3'- guuaccaCGCUGCGUgCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 17003 | 0.66 | 0.768915 |
Target: 5'- ----cGUGCaGCGCAUGACGGaaauCAUGGg -3' miRNA: 3'- guuacCACGcUGCGUGCUGCC----GUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 12297 | 0.66 | 0.768915 |
Target: 5'- ---cGGUGC-AgGC-CGGCGGCGUGu -3' miRNA: 3'- guuaCCACGcUgCGuGCUGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 2374 | 0.67 | 0.692606 |
Target: 5'- gCAAcGGUuCGAgGCGC-ACGGCAUGGc -3' miRNA: 3'- -GUUaCCAcGCUgCGUGcUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 27581 | 0.67 | 0.670053 |
Target: 5'- ---aGcGUGCGGCGCugGccgccaACGGCAUc- -3' miRNA: 3'- guuaC-CACGCUGCGugC------UGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 25046 | 0.68 | 0.635967 |
Target: 5'- ---cGGUGCGuCgGCGCGAUgcaGGCAUAc -3' miRNA: 3'- guuaCCACGCuG-CGUGCUG---CCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 6206 | 0.7 | 0.523621 |
Target: 5'- ---aGGUGaCGGCGCGCGGCuccuGGuCGUGGu -3' miRNA: 3'- guuaCCAC-GCUGCGUGCUG----CC-GUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26363 | 0.67 | 0.714909 |
Target: 5'- ---cGGcGCcGCGCGCGGCGGCc--- -3' miRNA: 3'- guuaCCaCGcUGCGUGCUGCCGuauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 26952 | 0.69 | 0.579218 |
Target: 5'- ---cGGUGgCGAUGCAacugGACGGCAg-- -3' miRNA: 3'- guuaCCAC-GCUGCGUg---CUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 13008 | 0.68 | 0.635967 |
Target: 5'- ----cGUGCGA-GCGCGugGGCAa-- -3' miRNA: 3'- guuacCACGCUgCGUGCugCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 15016 | 0.66 | 0.747676 |
Target: 5'- ---cGGUGCGccagGCGCGCGACGacuacaagagcGaCAUGGa -3' miRNA: 3'- guuaCCACGC----UGCGUGCUGC-----------C-GUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 22153 | 0.69 | 0.590513 |
Target: 5'- --cUGGUGCGG-GCaACGACGGCc--- -3' miRNA: 3'- guuACCACGCUgCG-UGCUGCCGuauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 30844 | 0.67 | 0.692606 |
Target: 5'- ---cGGccagccgGCGGCcCugGGCGGCAUGGc -3' miRNA: 3'- guuaCCa------CGCUGcGugCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 4369 | 0.67 | 0.681355 |
Target: 5'- ---cGGUGCG-CGUgaagGCGACGGCcgAc -3' miRNA: 3'- guuaCCACGCuGCG----UGCUGCCGuaUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 23452 | 0.68 | 0.624582 |
Target: 5'- gGAUGGUucGCG-CGUacACGcCGGCGUGGa -3' miRNA: 3'- gUUACCA--CGCuGCG--UGCuGCCGUAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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