Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26557 | 5' | -53.2 | NC_005357.1 | + | 12131 | 0.66 | 0.768915 |
Target: 5'- --uUGGcGCGACGCGCcACGcgcugcgcuuccGCGUAGg -3' miRNA: 3'- guuACCaCGCUGCGUGcUGC------------CGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 31433 | 0.66 | 0.758364 |
Target: 5'- ------gGCGACGcCACGaucuGCGGCGUGGu -3' miRNA: 3'- guuaccaCGCUGC-GUGC----UGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 18322 | 0.66 | 0.747676 |
Target: 5'- ---cGGcaguaGCGGCGCAgcuugGugGGCAUAGg -3' miRNA: 3'- guuaCCa----CGCUGCGUg----CugCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 11197 | 0.66 | 0.736862 |
Target: 5'- uGAUGGUGCGgucaaugccGCGCAUGACcGCc--- -3' miRNA: 3'- gUUACCACGC---------UGCGUGCUGcCGuauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 25782 | 0.74 | 0.312954 |
Target: 5'- aCGAUGGccGCGAUGCGCG-CGGCGc-- -3' miRNA: 3'- -GUUACCa-CGCUGCGUGCuGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 18461 | 0.74 | 0.321013 |
Target: 5'- ---cGGUcGCGGCGC-CGGCGGCGUc- -3' miRNA: 3'- guuaCCA-CGCUGCGuGCUGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 38751 | 0.71 | 0.449597 |
Target: 5'- -cGUGGUG-GAuuCGCACGAaGGCGUGGa -3' miRNA: 3'- guUACCACgCU--GCGUGCUgCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 9213 | 0.7 | 0.523621 |
Target: 5'- ---cGGcGCGGCGCACGuucuGCGGCGc-- -3' miRNA: 3'- guuaCCaCGCUGCGUGC----UGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 34044 | 0.7 | 0.531294 |
Target: 5'- -cGUGGgcgGCGAUucucgaagauucgaGCGCGGCGGCGcAGg -3' miRNA: 3'- guUACCa--CGCUG--------------CGUGCUGCCGUaUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 41219 | 0.68 | 0.601845 |
Target: 5'- gCAAUGG-GuCGAaaagGCGACGGCGUAGa -3' miRNA: 3'- -GUUACCaC-GCUgcg-UGCUGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 19041 | 0.68 | 0.624582 |
Target: 5'- --cUGGUaGCGGcCGC-CGGCGGCGUc- -3' miRNA: 3'- guuACCA-CGCU-GCGuGCUGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 35741 | 0.68 | 0.624582 |
Target: 5'- ---aGGUGUGcCuGCACGAUGGCGa-- -3' miRNA: 3'- guuaCCACGCuG-CGUGCUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 24438 | 0.68 | 0.624582 |
Target: 5'- ---cGGUGCcGCGCGCGGCcucGGCGa-- -3' miRNA: 3'- guuaCCACGcUGCGUGCUG---CCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 23452 | 0.68 | 0.624582 |
Target: 5'- gGAUGGUucGCG-CGUacACGcCGGCGUGGa -3' miRNA: 3'- gUUACCA--CGCuGCG--UGCuGCCGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 4369 | 0.67 | 0.681355 |
Target: 5'- ---cGGUGCG-CGUgaagGCGACGGCcgAc -3' miRNA: 3'- guuaCCACGCuGCG----UGCUGCCGuaUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 24549 | 0.67 | 0.692606 |
Target: 5'- -cGUGGUcGCGcaGCGCgGCGAUGGCGa-- -3' miRNA: 3'- guUACCA-CGC--UGCG-UGCUGCCGUauc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 28762 | 0.67 | 0.713801 |
Target: 5'- ---cGGUGCGcuucucgGCGCGC-ACGGCGUc- -3' miRNA: 3'- guuaCCACGC-------UGCGUGcUGCCGUAuc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 27628 | 0.66 | 0.725935 |
Target: 5'- aCGAUGG-GCcgGugGUugGuCGGCAUGa -3' miRNA: 3'- -GUUACCaCG--CugCGugCuGCCGUAUc -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 16067 | 0.66 | 0.725935 |
Target: 5'- -cGUGGccGCcGCGCGCGGCGcCGUAGa -3' miRNA: 3'- guUACCa-CGcUGCGUGCUGCcGUAUC- -5' |
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26557 | 5' | -53.2 | NC_005357.1 | + | 16746 | 0.66 | 0.725935 |
Target: 5'- -cGUGGcgGUcACGCuCGugGGCGUAGc -3' miRNA: 3'- guUACCa-CGcUGCGuGCugCCGUAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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