Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26558 | 3' | -62.1 | NC_005357.1 | + | 29089 | 0.66 | 0.342749 |
Target: 5'- gGGCgCCGAgGUcAGGcccgugcgggacuuGCUGCcggucacgcgcgcgaGGCCGCa -3' miRNA: 3'- aCCGgGGCUgCA-UCC--------------UGACG---------------CCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 7966 | 0.66 | 0.341949 |
Target: 5'- gUGGCCUCGGCGcgcaucGGGuuuccaUGUcGCCGCg -3' miRNA: 3'- -ACCGGGGCUGCa-----UCCug----ACGcCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 35156 | 0.66 | 0.341949 |
Target: 5'- cGGCCCCGAgGccaAGcagcaguucaaGACcuggGCGGCCGa -3' miRNA: 3'- aCCGGGGCUgCa--UC-----------CUGa---CGCCGGCg -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 10120 | 0.66 | 0.341949 |
Target: 5'- cGGCCuuGAUGgcGGcgaUGaGGUCGCg -3' miRNA: 3'- aCCGGggCUGCauCCug-ACgCCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 38041 | 0.66 | 0.341949 |
Target: 5'- aGGCCCggcgCGACGgcGccuGGCUGCGcauCCGCc -3' miRNA: 3'- aCCGGG----GCUGCauC---CUGACGCc--GGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 19223 | 0.66 | 0.340353 |
Target: 5'- aGGCCgaauucaCCGACG-AGGccgaccuGCUGCuGUCGCa -3' miRNA: 3'- aCCGG-------GGCUGCaUCC-------UGACGcCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 23362 | 0.66 | 0.337175 |
Target: 5'- gUGaCCUCGGCG-AGGAcacgcugaucgacgcCgccgGCGGCCGCu -3' miRNA: 3'- -ACcGGGGCUGCaUCCU---------------Ga---CGCCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 12839 | 0.66 | 0.33402 |
Target: 5'- cUGGCaaaCCGcGCGccuGGGC-GCGGCCGa -3' miRNA: 3'- -ACCGg--GGC-UGCau-CCUGaCGCCGGCg -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 9200 | 0.66 | 0.33402 |
Target: 5'- uUGGCCUgcuCGGCGgcGcGGCgcacguucUGCGGCgCGCc -3' miRNA: 3'- -ACCGGG---GCUGCauC-CUG--------ACGCCG-GCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 637 | 0.66 | 0.331668 |
Target: 5'- cGGCgUCCGGCGUcgagucggugcccaAGG-CUGUagccaccaGGCCGCc -3' miRNA: 3'- aCCG-GGGCUGCA--------------UCCuGACG--------CCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 23876 | 0.66 | 0.318569 |
Target: 5'- cGGCCuccaCCGACGUGaucGACUuCGGCCa- -3' miRNA: 3'- aCCGG----GGCUGCAUc--CUGAcGCCGGcg -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 32982 | 0.66 | 0.318569 |
Target: 5'- aGGCCCuCGGCGU-GGAC-GCGaCCa- -3' miRNA: 3'- aCCGGG-GCUGCAuCCUGaCGCcGGcg -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 24969 | 0.66 | 0.311047 |
Target: 5'- aGGCCCUGGCGUGGcACc-UGGCCu- -3' miRNA: 3'- aCCGGGGCUGCAUCcUGacGCCGGcg -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 16824 | 0.66 | 0.311047 |
Target: 5'- cGcGCCgCCGugGUugccACUGCcugGGCCGCa -3' miRNA: 3'- aC-CGG-GGCugCAucc-UGACG---CCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 4516 | 0.66 | 0.29641 |
Target: 5'- cGGCgCCCGugaACGUGGcGuGCUggGCGGUCGUg -3' miRNA: 3'- aCCG-GGGC---UGCAUC-C-UGA--CGCCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 12616 | 0.66 | 0.29641 |
Target: 5'- aUGGCgCCGACGcgcucGGcaucGCUGCuGCCGUc -3' miRNA: 3'- -ACCGgGGCUGCau---CC----UGACGcCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 28822 | 0.66 | 0.29641 |
Target: 5'- aGcGCgCCGuCGUcGGGUUGCGGCCGg -3' miRNA: 3'- aC-CGgGGCuGCAuCCUGACGCCGGCg -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 14616 | 0.66 | 0.29641 |
Target: 5'- gGGCagCGcGCGcgAGGacguGCUGCGGCUGCg -3' miRNA: 3'- aCCGggGC-UGCa-UCC----UGACGCCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 8523 | 0.67 | 0.289295 |
Target: 5'- gGGCCgUGGCGUAGGcgaugaaacGCUcGaCaGCCGCg -3' miRNA: 3'- aCCGGgGCUGCAUCC---------UGA-C-GcCGGCG- -5' |
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26558 | 3' | -62.1 | NC_005357.1 | + | 8212 | 0.67 | 0.289295 |
Target: 5'- cGGCCUCGuaguCGcgcuGGuCgGCGGCCGUc -3' miRNA: 3'- aCCGGGGCu---GCau--CCuGaCGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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