Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2656 | 3' | -57.7 | NC_001491.2 | + | 90042 | 0.66 | 0.841497 |
Target: 5'- uCCUCCGugccggcgcUCUUGCcguuguGuCCUUGCAcGCGCc -3' miRNA: 3'- -GGAGGC---------AGAGCGu-----C-GGAGCGUuCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 40926 | 0.66 | 0.854789 |
Target: 5'- uCCUCC-UCUagaucgaagcccccCGCAGCCUUGCucguccuGgGCa -3' miRNA: 3'- -GGAGGcAGA--------------GCGUCGGAGCGuu-----CgCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 99344 | 0.66 | 0.857078 |
Target: 5'- gCUUCGUCUCuugGCGGCCgauccacaucgaUCGCGaugaacgccccgAGUGCu -3' miRNA: 3'- gGAGGCAGAG---CGUCGG------------AGCGU------------UCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 35644 | 0.66 | 0.857078 |
Target: 5'- gCC-CCGUguacCUCGCcugcGGCCggCGC-GGCGCu -3' miRNA: 3'- -GGaGGCA----GAGCG----UCGGa-GCGuUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 56596 | 0.66 | 0.864577 |
Target: 5'- --aCCGgccCUCGCAGUUUUGguGGCGa -3' miRNA: 3'- ggaGGCa--GAGCGUCGGAGCguUCGCg -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 1758 | 0.66 | 0.864577 |
Target: 5'- aCUCC--CUCGgAGCCaggggaaCGCGGGUGCg -3' miRNA: 3'- gGAGGcaGAGCgUCGGa------GCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 3510 | 0.66 | 0.86752 |
Target: 5'- gCCgCCGUCUC-CAGCCcggccggguuggaGCAcAGCGCc -3' miRNA: 3'- -GGaGGCAGAGcGUCGGag-----------CGU-UCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 4783 | 0.66 | 0.871874 |
Target: 5'- gCCUCCuccCggGCGGCUgggaGCGGGCGCc -3' miRNA: 3'- -GGAGGca-GagCGUCGGag--CGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 61171 | 0.66 | 0.871874 |
Target: 5'- uCUUCCaa-UUGCAGCCUCu--GGCGCc -3' miRNA: 3'- -GGAGGcagAGCGUCGGAGcguUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 35436 | 0.66 | 0.871874 |
Target: 5'- gCCUacaCGguggacaCUCGC-GCCg-GCGAGCGCa -3' miRNA: 3'- -GGAg--GCa------GAGCGuCGGagCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 136256 | 0.66 | 0.872592 |
Target: 5'- cCCUCCGgaaaacccagcucgcCUUGUAGCCgcugGUAuAGCGCg -3' miRNA: 3'- -GGAGGCa--------------GAGCGUCGGag--CGU-UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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