Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2656 | 3' | -57.7 | NC_001491.2 | + | 147167 | 0.7 | 0.62562 |
Target: 5'- aCCUCCGUUUCuuCGGCCagggCGgCGAGCGa -3' miRNA: 3'- -GGAGGCAGAGc-GUCGGa---GC-GUUCGCg -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 136256 | 0.66 | 0.872592 |
Target: 5'- cCCUCCGgaaaacccagcucgcCUUGUAGCCgcugGUAuAGCGCg -3' miRNA: 3'- -GGAGGCa--------------GAGCGUCGGag--CGU-UCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 120828 | 0.67 | 0.825182 |
Target: 5'- uCC-CCGggagugCGCGcGCCU-GCAGGCGCu -3' miRNA: 3'- -GGaGGCaga---GCGU-CGGAgCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 115580 | 0.78 | 0.238131 |
Target: 5'- cCCgCUGUUggCGguGCUUCGCAGGCGCg -3' miRNA: 3'- -GGaGGCAGa-GCguCGGAGCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 114316 | 0.75 | 0.390317 |
Target: 5'- cCCUCCGUUUUGacagccagGGCCUCGCAcucuugcAGUGCc -3' miRNA: 3'- -GGAGGCAGAGCg-------UCGGAGCGU-------UCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 110772 | 0.68 | 0.76316 |
Target: 5'- aCUCUGg--CGCGGCUUCGCGAGa-- -3' miRNA: 3'- gGAGGCagaGCGUCGGAGCGUUCgcg -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 108993 | 0.68 | 0.725067 |
Target: 5'- gCUCCGagcggCUUcggcuugaguaGCAGCCUCGC--GCGCc -3' miRNA: 3'- gGAGGCa----GAG-----------CGUCGGAGCGuuCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 99344 | 0.66 | 0.857078 |
Target: 5'- gCUUCGUCUCuugGCGGCCgauccacaucgaUCGCGaugaacgccccgAGUGCu -3' miRNA: 3'- gGAGGCAGAG---CGUCGG------------AGCGU------------UCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 95234 | 0.7 | 0.665783 |
Target: 5'- gCCUCCGgaggUUGCuGGCCUCGCAGGa-- -3' miRNA: 3'- -GGAGGCag--AGCG-UCGGAGCGUUCgcg -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 94321 | 1.14 | 0.000976 |
Target: 5'- aCCUCCGUCUCGCAGCCUCGCAAGCGCg -3' miRNA: 3'- -GGAGGCAGAGCGUCGGAGCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 90042 | 0.66 | 0.841497 |
Target: 5'- uCCUCCGugccggcgcUCUUGCcguuguGuCCUUGCAcGCGCc -3' miRNA: 3'- -GGAGGC---------AGAGCGu-----C-GGAGCGUuCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 84355 | 0.77 | 0.289765 |
Target: 5'- gCCUCUGUCUcCGCAGCaagagcggcgauaugCaCGCAAGCGCc -3' miRNA: 3'- -GGAGGCAGA-GCGUCG---------------GaGCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 79331 | 0.66 | 0.833428 |
Target: 5'- aCUCagGUUgCGCAGCUUUaGCAucAGCGCg -3' miRNA: 3'- gGAGg-CAGaGCGUCGGAG-CGU--UCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 66761 | 0.72 | 0.536186 |
Target: 5'- aCUCCGgCUCGguGCUagcuUCGCAGGaGCu -3' miRNA: 3'- gGAGGCaGAGCguCGG----AGCGUUCgCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 61171 | 0.66 | 0.871874 |
Target: 5'- uCUUCCaa-UUGCAGCCUCu--GGCGCc -3' miRNA: 3'- -GGAGGcagAGCGUCGGAGcguUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 60970 | 0.67 | 0.781569 |
Target: 5'- gCCUCCa-CUCGCug---CGCGAGCGCu -3' miRNA: 3'- -GGAGGcaGAGCGucggaGCGUUCGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 56596 | 0.66 | 0.864577 |
Target: 5'- --aCCGgccCUCGCAGUUUUGguGGCGa -3' miRNA: 3'- ggaGGCa--GAGCGUCGGAGCguUCGCg -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 52863 | 0.71 | 0.605537 |
Target: 5'- gCCgCgGUCUgCGCGGCgCUgGCAAcGCGCg -3' miRNA: 3'- -GGaGgCAGA-GCGUCG-GAgCGUU-CGCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 40926 | 0.66 | 0.854789 |
Target: 5'- uCCUCC-UCUagaucgaagcccccCGCAGCCUUGCucguccuGgGCa -3' miRNA: 3'- -GGAGGcAGA--------------GCGUCGGAGCGuu-----CgCG- -5' |
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2656 | 3' | -57.7 | NC_001491.2 | + | 35644 | 0.66 | 0.857078 |
Target: 5'- gCC-CCGUguacCUCGCcugcGGCCggCGC-GGCGCu -3' miRNA: 3'- -GGaGGCA----GAGCG----UCGGa-GCGuUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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