miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2656 5' -53.4 NC_001491.2 + 32581 0.66 0.966298
Target:  5'- cGGGCc--GGAGCccucaccGGCUCCccaagGACCa -3'
miRNA:   3'- -CCCGuaaUCUCGa------CCGAGGcua--CUGG- -5'
2656 5' -53.4 NC_001491.2 + 31207 0.66 0.966298
Target:  5'- ------aGGGGgUGGCUCCGA-GGCCc -3'
miRNA:   3'- cccguaaUCUCgACCGAGGCUaCUGG- -5'
2656 5' -53.4 NC_001491.2 + 35924 0.66 0.965319
Target:  5'- cGGCGUgUGGAGCUGGUgguugagcaccCCGGcccgagccccggcgUGGCCc -3'
miRNA:   3'- cCCGUA-AUCUCGACCGa----------GGCU--------------ACUGG- -5'
2656 5' -53.4 NC_001491.2 + 3799 0.66 0.962955
Target:  5'- aGGGCGccGGGGCcucgGGCUguugCUGGcUGGCCg -3'
miRNA:   3'- -CCCGUaaUCUCGa---CCGA----GGCU-ACUGG- -5'
2656 5' -53.4 NC_001491.2 + 2800 0.66 0.96226
Target:  5'- cGGGCGgacgaGGAGaaggaggccgaGGCUCCGGccugGGCCg -3'
miRNA:   3'- -CCCGUaa---UCUCga---------CCGAGGCUa---CUGG- -5'
2656 5' -53.4 NC_001491.2 + 26683 0.66 0.959388
Target:  5'- aGGGCAgcuggagagGGAGCUuGCggCCGcgGGCg -3'
miRNA:   3'- -CCCGUaa-------UCUCGAcCGa-GGCuaCUGg -5'
2656 5' -53.4 NC_001491.2 + 129137 0.66 0.959388
Target:  5'- uGGGCAUguuuGCgcugggGGUUuuGAUGACa -3'
miRNA:   3'- -CCCGUAaucuCGa-----CCGAggCUACUGg -5'
2656 5' -53.4 NC_001491.2 + 68968 0.67 0.955592
Target:  5'- uGGGCccUGGGGCccaaGGCgauucCCGGuguUGACCa -3'
miRNA:   3'- -CCCGuaAUCUCGa---CCGa----GGCU---ACUGG- -5'
2656 5' -53.4 NC_001491.2 + 79911 0.67 0.951562
Target:  5'- aGGGCGUggUAaAGC-GGCUCUGGUaGugCg -3'
miRNA:   3'- -CCCGUA--AUcUCGaCCGAGGCUA-CugG- -5'
2656 5' -53.4 NC_001491.2 + 37820 0.67 0.947293
Target:  5'- aGGGCAggGGGcuagggcaaaccGUuuuguguuaaaUGGCaCCGAUGGCCa -3'
miRNA:   3'- -CCCGUaaUCU------------CG-----------ACCGaGGCUACUGG- -5'
2656 5' -53.4 NC_001491.2 + 5237 0.67 0.933031
Target:  5'- cGGGUgaugaGGAGCccgUGGC-CCGgcGACCg -3'
miRNA:   3'- -CCCGuaa--UCUCG---ACCGaGGCuaCUGG- -5'
2656 5' -53.4 NC_001491.2 + 34370 0.67 0.933031
Target:  5'- gGGGCA--AGAGCggcaagcgGcGCUCCGA--GCCc -3'
miRNA:   3'- -CCCGUaaUCUCGa-------C-CGAGGCUacUGG- -5'
2656 5' -53.4 NC_001491.2 + 106578 0.68 0.927786
Target:  5'- cGGCGcUGGAGCUaaaaGCUuuGAUG-CCa -3'
miRNA:   3'- cCCGUaAUCUCGAc---CGAggCUACuGG- -5'
2656 5' -53.4 NC_001491.2 + 22388 0.68 0.922293
Target:  5'- uGGGCGUUcGGGCUGGgugUuuGGUGggcuGCCa -3'
miRNA:   3'- -CCCGUAAuCUCGACCg--AggCUAC----UGG- -5'
2656 5' -53.4 NC_001491.2 + 48531 0.68 0.904336
Target:  5'- aGGCcguggUGGAGCUGGC-CaGGUGcACCg -3'
miRNA:   3'- cCCGua---AUCUCGACCGaGgCUAC-UGG- -5'
2656 5' -53.4 NC_001491.2 + 67310 0.69 0.884206
Target:  5'- gGGGCAcgGGcuGCUGGUggaCGAgcUGGCCa -3'
miRNA:   3'- -CCCGUaaUCu-CGACCGag-GCU--ACUGG- -5'
2656 5' -53.4 NC_001491.2 + 144956 0.7 0.862001
Target:  5'- uGGGCuccGGuGCUcGGCUUCGGaucgGACCa -3'
miRNA:   3'- -CCCGuaaUCuCGA-CCGAGGCUa---CUGG- -5'
2656 5' -53.4 NC_001491.2 + 4792 0.71 0.811999
Target:  5'- cGGGCGgcugGGAGCgGGCgCCGAagcUGgaGCCg -3'
miRNA:   3'- -CCCGUaa--UCUCGaCCGaGGCU---AC--UGG- -5'
2656 5' -53.4 NC_001491.2 + 4053 0.71 0.811999
Target:  5'- gGGGCAg-GGGGUUGGCcacgcucCCGGUGAUg -3'
miRNA:   3'- -CCCGUaaUCUCGACCGa------GGCUACUGg -5'
2656 5' -53.4 NC_001491.2 + 2713 0.71 0.784611
Target:  5'- aGGGCccggGGAGCcuggUGGC-CCGGggUGGCCa -3'
miRNA:   3'- -CCCGuaa-UCUCG----ACCGaGGCU--ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.