miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26560 3' -54.2 NC_005357.1 + 40707 0.66 0.734833
Target:  5'- aGGAC-UUGGAC---GCCCUCgCCGGCa -3'
miRNA:   3'- -CCUGcAACCUGuagUGGGGGaGGUUG- -5'
26560 3' -54.2 NC_005357.1 + 42120 0.66 0.702121
Target:  5'- cGGcACGcccUGGACGgaagagCGCgCCUUCCGGCg -3'
miRNA:   3'- -CC-UGCa--ACCUGUa-----GUGgGGGAGGUUG- -5'
26560 3' -54.2 NC_005357.1 + 14401 0.66 0.691058
Target:  5'- aGGCGUagcgaagcUGGGCGUCGCCaggcgcgCCUgCGGCa -3'
miRNA:   3'- cCUGCA--------ACCUGUAGUGGg------GGAgGUUG- -5'
26560 3' -54.2 NC_005357.1 + 22490 0.67 0.665408
Target:  5'- gGGGCGggcUGGGCuggucaugcccgccAUCAUCCCCg-CAGCg -3'
miRNA:   3'- -CCUGCa--ACCUG--------------UAGUGGGGGagGUUG- -5'
26560 3' -54.2 NC_005357.1 + 8002 0.67 0.635088
Target:  5'- cGGCGUcGGACGU-GCCCUUggcgCCAGCu -3'
miRNA:   3'- cCUGCAaCCUGUAgUGGGGGa---GGUUG- -5'
26560 3' -54.2 NC_005357.1 + 35236 0.67 0.623842
Target:  5'- --cCGaUGGcaagcccaGCGUCGCCCCCgaaUCCGACa -3'
miRNA:   3'- ccuGCaACC--------UGUAGUGGGGG---AGGUUG- -5'
26560 3' -54.2 NC_005357.1 + 17752 0.68 0.590189
Target:  5'- uGGGCG-UGGACGUgGCCCgCggCgGGCg -3'
miRNA:   3'- -CCUGCaACCUGUAgUGGGgGa-GgUUG- -5'
26560 3' -54.2 NC_005357.1 + 17917 0.69 0.534948
Target:  5'- uGGACGUgaucggcgUGGGCGcCAgCCCCUaCGACu -3'
miRNA:   3'- -CCUGCA--------ACCUGUaGUgGGGGAgGUUG- -5'
26560 3' -54.2 NC_005357.1 + 8935 0.7 0.492104
Target:  5'- cGGGCG-UGGACAguUCGCCgaaCUguUCCAGCa -3'
miRNA:   3'- -CCUGCaACCUGU--AGUGGg--GG--AGGUUG- -5'
26560 3' -54.2 NC_005357.1 + 37335 0.7 0.461036
Target:  5'- cGGACGcUGGGCcggcCGCCUgUUCCAACc -3'
miRNA:   3'- -CCUGCaACCUGua--GUGGGgGAGGUUG- -5'
26560 3' -54.2 NC_005357.1 + 17232 1.11 0.000676
Target:  5'- cGGACGUUGGACAUCACCCCCUCCAACc -3'
miRNA:   3'- -CCUGCAACCUGUAGUGGGGGAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.