miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26561 3' -52.9 NC_005357.1 + 32288 0.66 0.720483
Target:  5'- cGCCUUccagAAGAAagGAGGCGuGGccGGUACGAGg -3'
miRNA:   3'- -CGGAG----UUCUU--UUUCGC-CC--CCGUGCUU- -5'
26561 3' -52.9 NC_005357.1 + 13460 0.67 0.697914
Target:  5'- gGCCUCGGGc----GCGGugucGGGCAUGAc -3'
miRNA:   3'- -CGGAGUUCuuuuuCGCC----CCCGUGCUu -5'
26561 3' -52.9 NC_005357.1 + 15176 0.67 0.686518
Target:  5'- uGCCUCGGccAAGAGCcuGGGGCGCc-- -3'
miRNA:   3'- -CGGAGUUcuUUUUCGc-CCCCGUGcuu -5'
26561 3' -52.9 NC_005357.1 + 6876 0.68 0.617365
Target:  5'- gGCCUCGaacagaacGGGGAAAGCGaGGcGCACGu- -3'
miRNA:   3'- -CGGAGU--------UCUUUUUCGCcCC-CGUGCuu -5'
26561 3' -52.9 NC_005357.1 + 8983 0.68 0.597757
Target:  5'- cGCCUCGAuuuccucgccgcGCGGGGGCGCu-- -3'
miRNA:   3'- -CGGAGUUcuuuuu------CGCCCCCGUGcuu -5'
26561 3' -52.9 NC_005357.1 + 38175 0.68 0.594305
Target:  5'- cGCCUCAAGAccuacGGCGGGaagcuGGCA-GAAa -3'
miRNA:   3'- -CGGAGUUCUuuu--UCGCCC-----CCGUgCUU- -5'
26561 3' -52.9 NC_005357.1 + 21870 0.69 0.571386
Target:  5'- uGgCUCAuGAGcagcAAGCGGGGGCGCc-- -3'
miRNA:   3'- -CgGAGUuCUUu---UUCGCCCCCGUGcuu -5'
26561 3' -52.9 NC_005357.1 + 23570 0.69 0.560004
Target:  5'- cGCCggCAGGugcGGGCgGGGGGCgACGAu -3'
miRNA:   3'- -CGGa-GUUCuuuUUCG-CCCCCG-UGCUu -5'
26561 3' -52.9 NC_005357.1 + 632 0.7 0.515198
Target:  5'- aGCCUCGgcgcgggugaacGGGucAGGCGGGGGCuuuUGGu -3'
miRNA:   3'- -CGGAGU------------UCUuuUUCGCCCCCGu--GCUu -5'
26561 3' -52.9 NC_005357.1 + 10294 0.75 0.273721
Target:  5'- gGCCUUGAGGGAuu-CGGGGGCGuCGAGg -3'
miRNA:   3'- -CGGAGUUCUUUuucGCCCCCGU-GCUU- -5'
26561 3' -52.9 NC_005357.1 + 17922 1.09 0.001049
Target:  5'- cGCCUCAAGAAAAAGCGGGGGCACGAAg -3'
miRNA:   3'- -CGGAGUUCUUUUUCGCCCCCGUGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.