miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 9105 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9057 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9009 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 40915 0.68 0.345984
Target:  5'- -gGGCGCGAAUaagGGGGCGCCaugUC-CGa -3'
miRNA:   3'- ggCCGCGCUUGg--UCCUGCGGa--AGcGC- -5'
26562 3' -59.1 NC_005357.1 + 37275 0.68 0.345984
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 38044 0.68 0.345984
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5'
26562 3' -59.1 NC_005357.1 + 7936 0.68 0.379616
Target:  5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3'
miRNA:   3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 23471 0.68 0.385723
Target:  5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3'
miRNA:   3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5'
26562 3' -59.1 NC_005357.1 + 11429 0.68 0.38836
Target:  5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3'
miRNA:   3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 13082 0.68 0.377019
Target:  5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3'
miRNA:   3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 12889 0.67 0.4435
Target:  5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3'
miRNA:   3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5'
26562 3' -59.1 NC_005357.1 + 17062 0.67 0.397234
Target:  5'- uCUGGCGCcuGCCcGGugGCCggcuaUGCGa -3'
miRNA:   3'- -GGCCGCGcuUGGuCCugCGGaa---GCGC- -5'
26562 3' -59.1 NC_005357.1 + 6355 0.67 0.402621
Target:  5'- cCCGGCcCGAagGCCGGGGCGCUggguuacaccaggUCGg- -3'
miRNA:   3'- -GGCCGcGCU--UGGUCCUGCGGa------------AGCgc -5'
26562 3' -59.1 NC_005357.1 + 9628 0.67 0.409876
Target:  5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3'
miRNA:   3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 40700 0.67 0.415369
Target:  5'- aCCcGCGaGGACUuGGACGCCcUCGCc -3'
miRNA:   3'- -GGcCGCgCUUGGuCCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 1750 0.67 0.415369
Target:  5'- aCCGG-GCGGucaugGCCGGccuGCGCCUggCGCGu -3'
miRNA:   3'- -GGCCgCGCU-----UGGUCc--UGCGGAa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9575 0.67 0.415369
Target:  5'- cUCGGCGcCGAccgucugcgGCCAGGcgaaGCCgUUGCGg -3'
miRNA:   3'- -GGCCGC-GCU---------UGGUCCug--CGGaAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 19559 0.67 0.424625
Target:  5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3'
miRNA:   3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 40409 0.67 0.424625
Target:  5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3'
miRNA:   3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5'
26562 3' -59.1 NC_005357.1 + 3254 0.67 0.424625
Target:  5'- cCCGGCGgGAuucagcuuccgcGCCAGauagucGGCccguGCCUUUGCGa -3'
miRNA:   3'- -GGCCGCgCU------------UGGUC------CUG----CGGAAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.