Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26562 | 3' | -59.1 | NC_005357.1 | + | 23951 | 0.66 | 0.472671 |
Target: 5'- uCCGGUGgaCGAAUCGGccGACGCCgccggcgcCGCGa -3' miRNA: 3'- -GGCCGC--GCUUGGUC--CUGCGGaa------GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 29237 | 0.66 | 0.482609 |
Target: 5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3' miRNA: 3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 23761 | 0.66 | 0.472671 |
Target: 5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3' miRNA: 3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 38405 | 0.66 | 0.482609 |
Target: 5'- aCCcGCGCGGcaugACgCuGGugGCCggCGCGu -3' miRNA: 3'- -GGcCGCGCU----UG-GuCCugCGGaaGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 8962 | 0.66 | 0.462838 |
Target: 5'- gCCGuGcCGCGAuaGCCAGcGugGCCgugccggaUUCGCc -3' miRNA: 3'- -GGC-C-GCGCU--UGGUC-CugCGG--------AAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 5636 | 0.66 | 0.462838 |
Target: 5'- gCGGCGC-AGCUugcuGGugGCUggaCGCGg -3' miRNA: 3'- gGCCGCGcUUGGu---CCugCGGaa-GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 17090 | 0.66 | 0.496688 |
Target: 5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3' miRNA: 3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 33959 | 0.66 | 0.462838 |
Target: 5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3' miRNA: 3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 38769 | 0.66 | 0.472671 |
Target: 5'- -aGGCGUGGACgAGG-UGCUggCGUGa -3' miRNA: 3'- ggCCGCGCUUGgUCCuGCGGaaGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 33790 | 0.66 | 0.472671 |
Target: 5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3' miRNA: 3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 14413 | 0.66 | 0.482609 |
Target: 5'- gCUGG-GCGucGCCAGGcGCGCCU--GCGg -3' miRNA: 3'- -GGCCgCGCu-UGGUCC-UGCGGAagCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 34318 | 0.66 | 0.452146 |
Target: 5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3' miRNA: 3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 16093 | 0.66 | 0.453113 |
Target: 5'- gCGGCGCG-GCCAGuuCGCggugCGCGu -3' miRNA: 3'- gGCCGCGCuUGGUCcuGCGgaa-GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 24328 | 0.66 | 0.453113 |
Target: 5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3' miRNA: 3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 11189 | 0.66 | 0.460884 |
Target: 5'- cCCGGCucguagcugggccGCGcGCCGGGGuucuucaUGCUUUCGCc -3' miRNA: 3'- -GGCCG-------------CGCuUGGUCCU-------GCGGAAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 34644 | 0.66 | 0.492647 |
Target: 5'- -gGGCgGCGAAggguGGACGCCggCGCa -3' miRNA: 3'- ggCCG-CGCUUggu-CCUGCGGaaGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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