miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 14971 0.69 0.311519
Target:  5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3'
miRNA:   3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 16093 0.66 0.453113
Target:  5'- gCGGCGCG-GCCAGuuCGCggugCGCGu -3'
miRNA:   3'- gGCCGCGCuUGGUCcuGCGgaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 16392 0.68 0.371006
Target:  5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3'
miRNA:   3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 17062 0.67 0.397234
Target:  5'- uCUGGCGCcuGCCcGGugGCCggcuaUGCGa -3'
miRNA:   3'- -GGCCGCGcuUGGuCCugCGGaa---GCGC- -5'
26562 3' -59.1 NC_005357.1 + 17090 0.66 0.496688
Target:  5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3'
miRNA:   3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 17112 0.67 0.424625
Target:  5'- cCCGGCGaCGAgcGCCGGuGGCaggGCCggcCGCa -3'
miRNA:   3'- -GGCCGC-GCU--UGGUC-CUG---CGGaa-GCGc -5'
26562 3' -59.1 NC_005357.1 + 17691 0.67 0.434003
Target:  5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3'
miRNA:   3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 18094 1.09 0.000364
Target:  5'- gCCGGCGCGAACCAGGACGCCUUCGCGc -3'
miRNA:   3'- -GGCCGCGCUUGGUCCUGCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 19559 0.67 0.424625
Target:  5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3'
miRNA:   3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 20317 0.69 0.307027
Target:  5'- gCCGGuUGCGAugCGGGcugGCCUUCaGUGg -3'
miRNA:   3'- -GGCC-GCGCUugGUCCug-CGGAAG-CGC- -5'
26562 3' -59.1 NC_005357.1 + 20634 0.67 0.43306
Target:  5'- gCCGGUGUccgccaaGAACCAGGACaucagcaccguGCCgg-GCGg -3'
miRNA:   3'- -GGCCGCG-------CUUGGUCCUG-----------CGGaagCGC- -5'
26562 3' -59.1 NC_005357.1 + 23282 0.67 0.406238
Target:  5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3'
miRNA:   3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 23423 0.69 0.322195
Target:  5'- gCCGGUcaguGCGAcgccgGCCGGGAUGCggauggUUCGCGc -3'
miRNA:   3'- -GGCCG----CGCU-----UGGUCCUGCGg-----AAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 23471 0.68 0.385723
Target:  5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3'
miRNA:   3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5'
26562 3' -59.1 NC_005357.1 + 23761 0.66 0.472671
Target:  5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3'
miRNA:   3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5'
26562 3' -59.1 NC_005357.1 + 23951 0.66 0.472671
Target:  5'- uCCGGUGgaCGAAUCGGccGACGCCgccggcgcCGCGa -3'
miRNA:   3'- -GGCCGC--GCUUGGUC--CUGCGGaa------GCGC- -5'
26562 3' -59.1 NC_005357.1 + 24141 0.67 0.434003
Target:  5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5'
26562 3' -59.1 NC_005357.1 + 24328 0.66 0.453113
Target:  5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3'
miRNA:   3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5'
26562 3' -59.1 NC_005357.1 + 24648 0.69 0.29965
Target:  5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3'
miRNA:   3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 25052 0.73 0.166033
Target:  5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3'
miRNA:   3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.