miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 25322 0.69 0.29965
Target:  5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3'
miRNA:   3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 25341 0.7 0.284606
Target:  5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3'
miRNA:   3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 26133 0.72 0.199274
Target:  5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3'
miRNA:   3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 27455 0.67 0.424625
Target:  5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3'
miRNA:   3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 27808 0.66 0.462838
Target:  5'- aCCGGCGCcgGAAgCAuGGAaGCCgaCGCa -3'
miRNA:   3'- -GGCCGCG--CUUgGU-CCUgCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 28407 0.67 0.397234
Target:  5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3'
miRNA:   3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5'
26562 3' -59.1 NC_005357.1 + 28721 0.69 0.329987
Target:  5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3'
miRNA:   3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5'
26562 3' -59.1 NC_005357.1 + 29237 0.66 0.482609
Target:  5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3'
miRNA:   3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 29392 0.67 0.424625
Target:  5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3'
miRNA:   3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 30636 0.8 0.056272
Target:  5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3'
miRNA:   3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5'
26562 3' -59.1 NC_005357.1 + 30881 0.72 0.205081
Target:  5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3'
miRNA:   3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5'
26562 3' -59.1 NC_005357.1 + 31975 0.67 0.4435
Target:  5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3'
miRNA:   3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 33790 0.66 0.472671
Target:  5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3'
miRNA:   3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5'
26562 3' -59.1 NC_005357.1 + 33959 0.66 0.462838
Target:  5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3'
miRNA:   3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 34318 0.66 0.452146
Target:  5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3'
miRNA:   3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5'
26562 3' -59.1 NC_005357.1 + 34499 0.7 0.278344
Target:  5'- gUGGCGUGAAgguGGACGCCgagCGCa -3'
miRNA:   3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5'
26562 3' -59.1 NC_005357.1 + 34644 0.66 0.492647
Target:  5'- -gGGCgGCGAAggguGGACGCCggCGCa -3'
miRNA:   3'- ggCCG-CGCUUggu-CCUGCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 34668 0.77 0.088397
Target:  5'- -aGGCGCGAGCCuGGAUuCCUUCGUc -3'
miRNA:   3'- ggCCGCGCUUGGuCCUGcGGAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 34887 0.7 0.27423
Target:  5'- cCCGGcCGCGAGCCagcGugcggaagaacacucGGACGCCgaaacgCGCGc -3'
miRNA:   3'- -GGCC-GCGCUUGG---U---------------CCUGCGGaa----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 35248 0.71 0.239381
Target:  5'- cCCGGCuGCG--UCAGGGCGUCagCGCGu -3'
miRNA:   3'- -GGCCG-CGCuuGGUCCUGCGGaaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.