miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 35974 0.78 0.081271
Target:  5'- uCCuGCGCGA--CGGcGACGCCUUCGCGg -3'
miRNA:   3'- -GGcCGCGCUugGUC-CUGCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 36080 0.71 0.233348
Target:  5'- cCCGGCcuuCGGGCCGGG-CGCUUUgGCu -3'
miRNA:   3'- -GGCCGc--GCUUGGUCCuGCGGAAgCGc -5'
26562 3' -59.1 NC_005357.1 + 36902 0.66 0.462838
Target:  5'- -gGGCG-GAACCuGGGCGgCCggCGUGc -3'
miRNA:   3'- ggCCGCgCUUGGuCCUGC-GGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 37045 0.71 0.227444
Target:  5'- gCGGCGCGcACCAGuGACauaacCCUgggCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGUC-CUGc----GGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 37275 0.68 0.345984
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 38044 0.68 0.345984
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5'
26562 3' -59.1 NC_005357.1 + 38405 0.66 0.482609
Target:  5'- aCCcGCGCGGcaugACgCuGGugGCCggCGCGu -3'
miRNA:   3'- -GGcCGCGCU----UG-GuCCugCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 38707 0.77 0.093475
Target:  5'- aCCGGCGUGAACgGcacGGGCGCCacgagCGCGu -3'
miRNA:   3'- -GGCCGCGCUUGgU---CCUGCGGaa---GCGC- -5'
26562 3' -59.1 NC_005357.1 + 38769 0.66 0.472671
Target:  5'- -aGGCGUGGACgAGG-UGCUggCGUGa -3'
miRNA:   3'- ggCCGCGCUUGgUCCuGCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 40409 0.67 0.424625
Target:  5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3'
miRNA:   3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5'
26562 3' -59.1 NC_005357.1 + 40700 0.67 0.415369
Target:  5'- aCCcGCGaGGACUuGGACGCCcUCGCc -3'
miRNA:   3'- -GGcCGCgCUUGGuCCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 40915 0.68 0.345984
Target:  5'- -gGGCGCGAAUaagGGGGCGCCaugUC-CGa -3'
miRNA:   3'- ggCCGCGCUUGg--UCCUGCGGa--AGcGC- -5'
26562 3' -59.1 NC_005357.1 + 40959 0.67 0.434003
Target:  5'- cCCGGCcu--GCCAGGAgGCCgccgacCGCGc -3'
miRNA:   3'- -GGCCGcgcuUGGUCCUgCGGaa----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 41361 0.75 0.133789
Target:  5'- aCCGcGCGCGuuaCuGGACGCCgguUCGCGg -3'
miRNA:   3'- -GGC-CGCGCuugGuCCUGCGGa--AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 42149 0.69 0.322195
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5'
26562 3' -59.1 NC_005357.1 + 42253 0.66 0.462838
Target:  5'- aCGGUgcccaGCGAcACCGGGGCGCaucCGCc -3'
miRNA:   3'- gGCCG-----CGCU-UGGUCCUGCGgaaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.