Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26562 | 3' | -59.1 | NC_005357.1 | + | 34499 | 0.7 | 0.278344 |
Target: 5'- gUGGCGUGAAgguGGACGCCgagCGCa -3' miRNA: 3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 34318 | 0.66 | 0.452146 |
Target: 5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3' miRNA: 3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 33959 | 0.66 | 0.462838 |
Target: 5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3' miRNA: 3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 33790 | 0.66 | 0.472671 |
Target: 5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3' miRNA: 3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 31975 | 0.67 | 0.4435 |
Target: 5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3' miRNA: 3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 30881 | 0.72 | 0.205081 |
Target: 5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3' miRNA: 3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 30636 | 0.8 | 0.056272 |
Target: 5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3' miRNA: 3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 29392 | 0.67 | 0.424625 |
Target: 5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3' miRNA: 3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 29237 | 0.66 | 0.482609 |
Target: 5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3' miRNA: 3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 28721 | 0.69 | 0.329987 |
Target: 5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3' miRNA: 3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 28407 | 0.67 | 0.397234 |
Target: 5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3' miRNA: 3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 27808 | 0.66 | 0.462838 |
Target: 5'- aCCGGCGCcgGAAgCAuGGAaGCCgaCGCa -3' miRNA: 3'- -GGCCGCG--CUUgGU-CCUgCGGaaGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 27455 | 0.67 | 0.424625 |
Target: 5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3' miRNA: 3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 26133 | 0.72 | 0.199274 |
Target: 5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3' miRNA: 3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 25341 | 0.7 | 0.284606 |
Target: 5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3' miRNA: 3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 25322 | 0.69 | 0.29965 |
Target: 5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3' miRNA: 3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 25052 | 0.73 | 0.166033 |
Target: 5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3' miRNA: 3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 24648 | 0.69 | 0.29965 |
Target: 5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3' miRNA: 3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 24328 | 0.66 | 0.453113 |
Target: 5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3' miRNA: 3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 24141 | 0.67 | 0.434003 |
Target: 5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3' miRNA: 3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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