Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26562 | 3' | -59.1 | NC_005357.1 | + | 13082 | 0.68 | 0.377019 |
Target: 5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3' miRNA: 3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 12889 | 0.67 | 0.4435 |
Target: 5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3' miRNA: 3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 12824 | 0.71 | 0.233348 |
Target: 5'- cCCGGCGCuGGACaacuGGcaaaccgcGCGCCUgggCGCGg -3' miRNA: 3'- -GGCCGCG-CUUGgu--CC--------UGCGGAa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 11429 | 0.68 | 0.38836 |
Target: 5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3' miRNA: 3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 11189 | 0.66 | 0.460884 |
Target: 5'- cCCGGCucguagcugggccGCGcGCCGGGGuucuucaUGCUUUCGCc -3' miRNA: 3'- -GGCCG-------------CGCuUGGUCCU-------GCGGAAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 10321 | 0.71 | 0.251837 |
Target: 5'- gUCGGCaGCG-GCCAGGGCGUUgagcaaCGCGg -3' miRNA: 3'- -GGCCG-CGCuUGGUCCUGCGGaa----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9874 | 0.7 | 0.264821 |
Target: 5'- aCCGGCGCGcugcuucucGGCCAGG-CGCgUg-GCGa -3' miRNA: 3'- -GGCCGCGC---------UUGGUCCuGCGgAagCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9733 | 0.69 | 0.329987 |
Target: 5'- gCCGcGgGCGAACUgcucgugguGGGCGCgCUUCGCc -3' miRNA: 3'- -GGC-CgCGCUUGGu--------CCUGCG-GAAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9628 | 0.67 | 0.409876 |
Target: 5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3' miRNA: 3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9575 | 0.67 | 0.415369 |
Target: 5'- cUCGGCGcCGAccgucugcgGCCAGGcgaaGCCgUUGCGg -3' miRNA: 3'- -GGCCGC-GCU---------UGGUCCug--CGGaAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9340 | 0.66 | 0.472671 |
Target: 5'- -gGGCGagGAugUAGGcCGCCgcgUCGCu -3' miRNA: 3'- ggCCGCg-CUugGUCCuGCGGa--AGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9201 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9153 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9105 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9057 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9009 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 8962 | 0.66 | 0.462838 |
Target: 5'- gCCGuGcCGCGAuaGCCAGcGugGCCgugccggaUUCGCc -3' miRNA: 3'- -GGC-C-GCGCU--UGGUC-CugCGG--------AAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 8447 | 0.71 | 0.221666 |
Target: 5'- aUCGGCGCGAugUcggcgucgAGGugGCCUgcgaugcCGCa -3' miRNA: 3'- -GGCCGCGCUugG--------UCCugCGGAa------GCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 7936 | 0.68 | 0.379616 |
Target: 5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3' miRNA: 3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 7831 | 0.66 | 0.472671 |
Target: 5'- -aGGCGCGGcugcacgaugACCAGG-CGCacgCGCu -3' miRNA: 3'- ggCCGCGCU----------UGGUCCuGCGgaaGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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