miRNA display CGI


Results 81 - 96 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 41361 0.75 0.133789
Target:  5'- aCCGcGCGCGuuaCuGGACGCCgguUCGCGg -3'
miRNA:   3'- -GGC-CGCGCuugGuCCUGCGGa--AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 25341 0.7 0.284606
Target:  5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3'
miRNA:   3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 14722 0.69 0.307027
Target:  5'- aCCGGCgGCGAGCCGc--UGCCggCGCGc -3'
miRNA:   3'- -GGCCG-CGCUUGGUccuGCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 17062 0.67 0.397234
Target:  5'- uCUGGCGCcuGCCcGGugGCCggcuaUGCGa -3'
miRNA:   3'- -GGCCGCGcuUGGuCCugCGGaa---GCGC- -5'
26562 3' -59.1 NC_005357.1 + 5442 0.68 0.383098
Target:  5'- gCGGCGUGGGCgAGGucgguaucgaccaucACGCCgcggUCGUu -3'
miRNA:   3'- gGCCGCGCUUGgUCC---------------UGCGGa---AGCGc -5'
26562 3' -59.1 NC_005357.1 + 13082 0.68 0.377019
Target:  5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3'
miRNA:   3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 16392 0.68 0.371006
Target:  5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3'
miRNA:   3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 9201 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9153 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9105 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9057 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9009 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 40915 0.68 0.345984
Target:  5'- -gGGCGCGAAUaagGGGGCGCCaugUC-CGa -3'
miRNA:   3'- ggCCGCGCUUGg--UCCUGCGGa--AGcGC- -5'
26562 3' -59.1 NC_005357.1 + 14594 0.69 0.337917
Target:  5'- gCGGCGCG-GCC-GG-CGCCacCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGuCCuGCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 14971 0.69 0.311519
Target:  5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3'
miRNA:   3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 38707 0.77 0.093475
Target:  5'- aCCGGCGUGAACgGcacGGGCGCCacgagCGCGu -3'
miRNA:   3'- -GGCCGCGCUUGgU---CCUGCGGaa---GCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.