miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 31975 0.67 0.4435
Target:  5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3'
miRNA:   3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 16392 0.68 0.371006
Target:  5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3'
miRNA:   3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 36902 0.66 0.462838
Target:  5'- -gGGCG-GAACCuGGGCGgCCggCGUGc -3'
miRNA:   3'- ggCCGCgCUUGGuCCUGC-GGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 9201 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 5442 0.68 0.383098
Target:  5'- gCGGCGUGGGCgAGGucgguaucgaccaucACGCCgcggUCGUu -3'
miRNA:   3'- gGCCGCGCUUGgUCC---------------UGCGGa---AGCGc -5'
26562 3' -59.1 NC_005357.1 + 9628 0.67 0.409876
Target:  5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3'
miRNA:   3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 23951 0.66 0.472671
Target:  5'- uCCGGUGgaCGAAUCGGccGACGCCgccggcgcCGCGa -3'
miRNA:   3'- -GGCCGC--GCUUGGUC--CUGCGGaa------GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9340 0.66 0.472671
Target:  5'- -gGGCGagGAugUAGGcCGCCgcgUCGCu -3'
miRNA:   3'- ggCCGCg-CUugGUCCuGCGGa--AGCGc -5'
26562 3' -59.1 NC_005357.1 + 42253 0.66 0.462838
Target:  5'- aCGGUgcccaGCGAcACCGGGGCGCaucCGCc -3'
miRNA:   3'- gGCCG-----CGCU-UGGUCCUGCGgaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 8962 0.66 0.462838
Target:  5'- gCCGuGcCGCGAuaGCCAGcGugGCCgugccggaUUCGCc -3'
miRNA:   3'- -GGC-C-GCGCU--UGGUC-CugCGG--------AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 5636 0.66 0.462838
Target:  5'- gCGGCGC-AGCUugcuGGugGCUggaCGCGg -3'
miRNA:   3'- gGCCGCGcUUGGu---CCugCGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 24328 0.66 0.453113
Target:  5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3'
miRNA:   3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5'
26562 3' -59.1 NC_005357.1 + 34318 0.66 0.452146
Target:  5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3'
miRNA:   3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5'
26562 3' -59.1 NC_005357.1 + 17112 0.67 0.424625
Target:  5'- cCCGGCGaCGAgcGCCGGuGGCaggGCCggcCGCa -3'
miRNA:   3'- -GGCCGC-GCU--UGGUC-CUG---CGGaa-GCGc -5'
26562 3' -59.1 NC_005357.1 + 19559 0.67 0.424625
Target:  5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3'
miRNA:   3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 29237 0.66 0.482609
Target:  5'- -aGGCGUacaacgccGGCCaAGGGCGCCcagCGCGg -3'
miRNA:   3'- ggCCGCGc-------UUGG-UCCUGCGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 27455 0.67 0.424625
Target:  5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3'
miRNA:   3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 29392 0.67 0.424625
Target:  5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3'
miRNA:   3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 454 0.67 0.434003
Target:  5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3'
miRNA:   3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 42149 0.69 0.322195
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.