miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 20317 0.69 0.307027
Target:  5'- gCCGGuUGCGAugCGGGcugGCCUUCaGUGg -3'
miRNA:   3'- -GGCC-GCGCUugGUCCug-CGGAAG-CGC- -5'
26562 3' -59.1 NC_005357.1 + 25322 0.69 0.29965
Target:  5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3'
miRNA:   3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 35974 0.78 0.081271
Target:  5'- uCCuGCGCGA--CGGcGACGCCUUCGCGg -3'
miRNA:   3'- -GGcCGCGCUugGUC-CUGCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 34499 0.7 0.278344
Target:  5'- gUGGCGUGAAgguGGACGCCgagCGCa -3'
miRNA:   3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5'
26562 3' -59.1 NC_005357.1 + 37045 0.71 0.227444
Target:  5'- gCGGCGCGcACCAGuGACauaacCCUgggCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGUC-CUGc----GGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 42149 0.69 0.322195
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5'
26562 3' -59.1 NC_005357.1 + 37275 0.68 0.345984
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 33790 0.66 0.472671
Target:  5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3'
miRNA:   3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5'
26562 3' -59.1 NC_005357.1 + 17090 0.66 0.496688
Target:  5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3'
miRNA:   3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 17691 0.67 0.434003
Target:  5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3'
miRNA:   3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 454 0.67 0.434003
Target:  5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3'
miRNA:   3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 29392 0.67 0.424625
Target:  5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3'
miRNA:   3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 27455 0.67 0.424625
Target:  5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3'
miRNA:   3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5'
26562 3' -59.1 NC_005357.1 + 23282 0.67 0.406238
Target:  5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3'
miRNA:   3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 28407 0.67 0.397234
Target:  5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3'
miRNA:   3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5'
26562 3' -59.1 NC_005357.1 + 690 0.67 0.397234
Target:  5'- gCGGCGCcGGCCGGGcCGCCcaagauacCGCc -3'
miRNA:   3'- gGCCGCGcUUGGUCCuGCGGaa------GCGc -5'
26562 3' -59.1 NC_005357.1 + 11429 0.68 0.38836
Target:  5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3'
miRNA:   3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 23471 0.68 0.385723
Target:  5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3'
miRNA:   3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5'
26562 3' -59.1 NC_005357.1 + 7936 0.68 0.379616
Target:  5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3'
miRNA:   3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 38044 0.68 0.345984
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.