Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26562 | 3' | -59.1 | NC_005357.1 | + | 23761 | 0.66 | 0.472671 |
Target: 5'- gCCGGCGCc-ACCGGGccgauGCGCCgcgGCu -3' miRNA: 3'- -GGCCGCGcuUGGUCC-----UGCGGaagCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 33959 | 0.66 | 0.462838 |
Target: 5'- gUCGGCuGCGGcaucgcaggccACCucGACGCCgacaUCGCGc -3' miRNA: 3'- -GGCCG-CGCU-----------UGGucCUGCGGa---AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 38769 | 0.66 | 0.472671 |
Target: 5'- -aGGCGUGGACgAGG-UGCUggCGUGa -3' miRNA: 3'- ggCCGCGCUUGgUCCuGCGGaaGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 33790 | 0.66 | 0.472671 |
Target: 5'- aCGGCGCGGcCUGGGGCGUUUcCGa- -3' miRNA: 3'- gGCCGCGCUuGGUCCUGCGGAaGCgc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 14413 | 0.66 | 0.482609 |
Target: 5'- gCUGG-GCGucGCCAGGcGCGCCU--GCGg -3' miRNA: 3'- -GGCCgCGCu-UGGUCC-UGCGGAagCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 454 | 0.67 | 0.434003 |
Target: 5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3' miRNA: 3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 17691 | 0.67 | 0.434003 |
Target: 5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3' miRNA: 3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 7936 | 0.68 | 0.379616 |
Target: 5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3' miRNA: 3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 23471 | 0.68 | 0.385723 |
Target: 5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3' miRNA: 3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 11429 | 0.68 | 0.38836 |
Target: 5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3' miRNA: 3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 690 | 0.67 | 0.397234 |
Target: 5'- gCGGCGCcGGCCGGGcCGCCcaagauacCGCc -3' miRNA: 3'- gGCCGCGcUUGGUCCuGCGGaa------GCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 28407 | 0.67 | 0.397234 |
Target: 5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3' miRNA: 3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 23282 | 0.67 | 0.406238 |
Target: 5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3' miRNA: 3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 27455 | 0.67 | 0.424625 |
Target: 5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3' miRNA: 3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 29392 | 0.67 | 0.424625 |
Target: 5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3' miRNA: 3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 17090 | 0.66 | 0.496688 |
Target: 5'- gCCGGCGCGGuucucgGCCGGGccuuggggcuugaccACGaagUUGCGg -3' miRNA: 3'- -GGCCGCGCU------UGGUCC---------------UGCggaAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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