miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26563 3' -61.1 NC_005357.1 + 18398 1.11 0.000169
Target:  5'- cGCCGGUGGCGGCCACGUCGGCGAAGGu -3'
miRNA:   3'- -CGGCCACCGCCGGUGCAGCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 3740 0.83 0.02476
Target:  5'- cGCCGGUGGUGGgCACGUCGGUGccgccgcuGGa -3'
miRNA:   3'- -CGGCCACCGCCgGUGCAGCCGCuu------CC- -5'
26563 3' -61.1 NC_005357.1 + 36855 0.79 0.046228
Target:  5'- -aCGGUGGCGGCCAgCGUUGGCGccGu -3'
miRNA:   3'- cgGCCACCGCCGGU-GCAGCCGCuuCc -5'
26563 3' -61.1 NC_005357.1 + 21591 0.76 0.081777
Target:  5'- uUCGGUGGCGGUCAucugcggauuggugcCGUUGGCGAgcaugAGGa -3'
miRNA:   3'- cGGCCACCGCCGGU---------------GCAGCCGCU-----UCC- -5'
26563 3' -61.1 NC_005357.1 + 18563 0.76 0.085475
Target:  5'- cGUCGGUGGaGGCCGCGcucgCGGUGAcGGc -3'
miRNA:   3'- -CGGCCACCgCCGGUGCa---GCCGCUuCC- -5'
26563 3' -61.1 NC_005357.1 + 9310 0.75 0.087866
Target:  5'- cUCGGcgaccUGGCGGCgCACGUCGGCGcggcGGGc -3'
miRNA:   3'- cGGCC-----ACCGCCG-GUGCAGCCGCu---UCC- -5'
26563 3' -61.1 NC_005357.1 + 8219 0.73 0.132238
Target:  5'- gGCCaguucGUGcGCGGCCGugcccuCGUCGGCGAAGu -3'
miRNA:   3'- -CGGc----CAC-CGCCGGU------GCAGCCGCUUCc -5'
26563 3' -61.1 NC_005357.1 + 2823 0.72 0.143306
Target:  5'- gGCCaGGUGcucGCGGCCACGcgcagCGGCGccagcaccagcGAGGg -3'
miRNA:   3'- -CGG-CCAC---CGCCGGUGCa----GCCGC-----------UUCC- -5'
26563 3' -61.1 NC_005357.1 + 4274 0.72 0.147181
Target:  5'- cGCCGGcaUGGUgauGGCCGUGUCGGCGGu-- -3'
miRNA:   3'- -CGGCC--ACCG---CCGGUGCAGCCGCUucc -5'
26563 3' -61.1 NC_005357.1 + 10571 0.72 0.15115
Target:  5'- uGCaCGGcgagGGCGuGCCGCaggaauucuucGUCGGUGAGGGu -3'
miRNA:   3'- -CG-GCCa---CCGC-CGGUG-----------CAGCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 40949 0.71 0.177066
Target:  5'- aGCCGGUGGCGGaaGaagaaCGGCGucGAGGa -3'
miRNA:   3'- -CGGCCACCGCCggUgca--GCCGC--UUCC- -5'
26563 3' -61.1 NC_005357.1 + 5146 0.71 0.177066
Target:  5'- uGCCGcgcaGGCGGCCGuCGcugcucacgcccUUGGCGAGGGu -3'
miRNA:   3'- -CGGCca--CCGCCGGU-GC------------AGCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 26949 0.7 0.206328
Target:  5'- uGCCGGUGGCgaugcaacuggacGGCaGCuUCGGCcAAGGg -3'
miRNA:   3'- -CGGCCACCG-------------CCGgUGcAGCCGcUUCC- -5'
26563 3' -61.1 NC_005357.1 + 13857 0.7 0.217714
Target:  5'- uGCCGGUGGCcgacgugcGcGCCGCGauggcCGGCGGccgcaAGGu -3'
miRNA:   3'- -CGGCCACCG--------C-CGGUGCa----GCCGCU-----UCC- -5'
26563 3' -61.1 NC_005357.1 + 23184 0.7 0.229053
Target:  5'- uGCUGGUgcgacagcagcaGGuCGGCCuCGUCGGUGAAu- -3'
miRNA:   3'- -CGGCCA------------CC-GCCGGuGCAGCCGCUUcc -5'
26563 3' -61.1 NC_005357.1 + 24298 0.69 0.234907
Target:  5'- cGUgGG-GGCGGUgAgGUCGGCGAgcagccgcGGGu -3'
miRNA:   3'- -CGgCCaCCGCCGgUgCAGCCGCU--------UCC- -5'
26563 3' -61.1 NC_005357.1 + 26366 0.69 0.240887
Target:  5'- cGCCGcGcgcGGCGGCCACGUgcGCGAAcuGGc -3'
miRNA:   3'- -CGGC-Ca--CCGCCGGUGCAgcCGCUU--CC- -5'
26563 3' -61.1 NC_005357.1 + 24909 0.69 0.240887
Target:  5'- -gCGGUGGCGcGCUAUaucagcUUGGUGAAGGa -3'
miRNA:   3'- cgGCCACCGC-CGGUGc-----AGCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 30156 0.69 0.245148
Target:  5'- cGUCGGacaucagcggcaguUGGC-GCCA-GUCGGUGAAGGc -3'
miRNA:   3'- -CGGCC--------------ACCGcCGGUgCAGCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 13749 0.69 0.246993
Target:  5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3'
miRNA:   3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.