Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26563 | 3' | -61.1 | NC_005357.1 | + | 26050 | 0.67 | 0.31523 |
Target: 5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3' miRNA: 3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 24003 | 0.67 | 0.31523 |
Target: 5'- aCUGGcgaaGGUGGgCGCGUCGGCcaauucagcGAAGGc -3' miRNA: 3'- cGGCCa---CCGCCgGUGCAGCCG---------CUUCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 13306 | 0.68 | 0.307808 |
Target: 5'- cGCCGG-GGcCGGCguUGUaggCGGCGuAGGc -3' miRNA: 3'- -CGGCCaCC-GCCGguGCA---GCCGCuUCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 31519 | 0.68 | 0.307808 |
Target: 5'- aCCGGcgGGCaGGUCGCcauucCGGUGGAGGa -3' miRNA: 3'- cGGCCa-CCG-CCGGUGca---GCCGCUUCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 4178 | 0.68 | 0.307808 |
Target: 5'- aGCCGGccgccucgaUGGCGGgCAUGUUGGCc---- -3' miRNA: 3'- -CGGCC---------ACCGCCgGUGCAGCCGcuucc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 1876 | 0.68 | 0.299799 |
Target: 5'- aGCCcGUGGCcggcgcuGGCCGgGUgGGCGAacagcagcGGGa -3' miRNA: 3'- -CGGcCACCG-------CCGGUgCAgCCGCU--------UCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 23737 | 0.68 | 0.293366 |
Target: 5'- cUCGGUGGCGcgcagcagcGCCAUGcCGGCGccaccGGGc -3' miRNA: 3'- cGGCCACCGC---------CGGUGCaGCCGCu----UCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 41115 | 0.68 | 0.293366 |
Target: 5'- uGUCGGccUGGUGGCCgucgcccuggGCG-CGGCGGuguGGg -3' miRNA: 3'- -CGGCC--ACCGCCGG----------UGCaGCCGCUu--CC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 38420 | 0.68 | 0.272704 |
Target: 5'- cGCUGGUGGcCGG-CGCGUUuugGGCGGAc- -3' miRNA: 3'- -CGGCCACC-GCCgGUGCAG---CCGCUUcc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 34877 | 0.68 | 0.272704 |
Target: 5'- aGCCGGUGGC-GCCGCGgaUCGaGCa---- -3' miRNA: 3'- -CGGCCACCGcCGGUGC--AGC-CGcuucc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 33564 | 0.69 | 0.268715 |
Target: 5'- gGCCGaacGCuaccgcaccguccugGGCUACGUCGGCGAGGa -3' miRNA: 3'- -CGGCcacCG---------------CCGGUGCAGCCGCUUCc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 19329 | 0.69 | 0.266081 |
Target: 5'- cGCCGuG-GGC-GCCGcCGUUGGCGucGGg -3' miRNA: 3'- -CGGC-CaCCGcCGGU-GCAGCCGCuuCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 15376 | 0.69 | 0.266081 |
Target: 5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3' miRNA: 3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 3833 | 0.69 | 0.266081 |
Target: 5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3' miRNA: 3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 13448 | 0.69 | 0.266081 |
Target: 5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3' miRNA: 3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 13392 | 0.69 | 0.266081 |
Target: 5'- cGCCGGUGGguaucgaccUGGCCgaaGCG-CGGCGccuGGu -3' miRNA: 3'- -CGGCCACC---------GCCGG---UGCaGCCGCuu-CC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 39333 | 0.69 | 0.253227 |
Target: 5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3' miRNA: 3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 41431 | 0.69 | 0.253227 |
Target: 5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3' miRNA: 3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 13749 | 0.69 | 0.246993 |
Target: 5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3' miRNA: 3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5' |
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26563 | 3' | -61.1 | NC_005357.1 | + | 14738 | 0.69 | 0.246993 |
Target: 5'- uGCCGGcGcGCGGCC-UGUauuccaagaccaCGGUGGAGGu -3' miRNA: 3'- -CGGCCaC-CGCCGGuGCA------------GCCGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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