miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26563 3' -61.1 NC_005357.1 + 26050 0.67 0.31523
Target:  5'- cGCgCGGcgGGCGcGCUccauGCGcUCGGCGAacucGGGg -3'
miRNA:   3'- -CG-GCCa-CCGC-CGG----UGC-AGCCGCU----UCC- -5'
26563 3' -61.1 NC_005357.1 + 24003 0.67 0.31523
Target:  5'- aCUGGcgaaGGUGGgCGCGUCGGCcaauucagcGAAGGc -3'
miRNA:   3'- cGGCCa---CCGCCgGUGCAGCCG---------CUUCC- -5'
26563 3' -61.1 NC_005357.1 + 13306 0.68 0.307808
Target:  5'- cGCCGG-GGcCGGCguUGUaggCGGCGuAGGc -3'
miRNA:   3'- -CGGCCaCC-GCCGguGCA---GCCGCuUCC- -5'
26563 3' -61.1 NC_005357.1 + 31519 0.68 0.307808
Target:  5'- aCCGGcgGGCaGGUCGCcauucCGGUGGAGGa -3'
miRNA:   3'- cGGCCa-CCG-CCGGUGca---GCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 4178 0.68 0.307808
Target:  5'- aGCCGGccgccucgaUGGCGGgCAUGUUGGCc---- -3'
miRNA:   3'- -CGGCC---------ACCGCCgGUGCAGCCGcuucc -5'
26563 3' -61.1 NC_005357.1 + 1876 0.68 0.299799
Target:  5'- aGCCcGUGGCcggcgcuGGCCGgGUgGGCGAacagcagcGGGa -3'
miRNA:   3'- -CGGcCACCG-------CCGGUgCAgCCGCU--------UCC- -5'
26563 3' -61.1 NC_005357.1 + 23737 0.68 0.293366
Target:  5'- cUCGGUGGCGcgcagcagcGCCAUGcCGGCGccaccGGGc -3'
miRNA:   3'- cGGCCACCGC---------CGGUGCaGCCGCu----UCC- -5'
26563 3' -61.1 NC_005357.1 + 41115 0.68 0.293366
Target:  5'- uGUCGGccUGGUGGCCgucgcccuggGCG-CGGCGGuguGGg -3'
miRNA:   3'- -CGGCC--ACCGCCGG----------UGCaGCCGCUu--CC- -5'
26563 3' -61.1 NC_005357.1 + 38420 0.68 0.272704
Target:  5'- cGCUGGUGGcCGG-CGCGUUuugGGCGGAc- -3'
miRNA:   3'- -CGGCCACC-GCCgGUGCAG---CCGCUUcc -5'
26563 3' -61.1 NC_005357.1 + 34877 0.68 0.272704
Target:  5'- aGCCGGUGGC-GCCGCGgaUCGaGCa---- -3'
miRNA:   3'- -CGGCCACCGcCGGUGC--AGC-CGcuucc -5'
26563 3' -61.1 NC_005357.1 + 33564 0.69 0.268715
Target:  5'- gGCCGaacGCuaccgcaccguccugGGCUACGUCGGCGAGGa -3'
miRNA:   3'- -CGGCcacCG---------------CCGGUGCAGCCGCUUCc -5'
26563 3' -61.1 NC_005357.1 + 19329 0.69 0.266081
Target:  5'- cGCCGuG-GGC-GCCGcCGUUGGCGucGGg -3'
miRNA:   3'- -CGGC-CaCCGcCGGU-GCAGCCGCuuCC- -5'
26563 3' -61.1 NC_005357.1 + 15376 0.69 0.266081
Target:  5'- cUCGGUGaGCGcGuCCGCGUgcgggcCGGCGAAGa -3'
miRNA:   3'- cGGCCAC-CGC-C-GGUGCA------GCCGCUUCc -5'
26563 3' -61.1 NC_005357.1 + 3833 0.69 0.266081
Target:  5'- uGCC-GUGGUGaGUCAUGaccUCGGCGAAGu -3'
miRNA:   3'- -CGGcCACCGC-CGGUGC---AGCCGCUUCc -5'
26563 3' -61.1 NC_005357.1 + 13448 0.69 0.266081
Target:  5'- cGCCaGcuUGGCGGCCuCGggcgCGGUGucGGg -3'
miRNA:   3'- -CGGcC--ACCGCCGGuGCa---GCCGCuuCC- -5'
26563 3' -61.1 NC_005357.1 + 13392 0.69 0.266081
Target:  5'- cGCCGGUGGguaucgaccUGGCCgaaGCG-CGGCGccuGGu -3'
miRNA:   3'- -CGGCCACC---------GCCGG---UGCaGCCGCuu-CC- -5'
26563 3' -61.1 NC_005357.1 + 39333 0.69 0.253227
Target:  5'- uUCGGUGGuuGCCGCGU-GuCGAAGGg -3'
miRNA:   3'- cGGCCACCgcCGGUGCAgCcGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 41431 0.69 0.253227
Target:  5'- gGCCaGUGGCgcgGGCaGCGggcugaCGGUGAAGGg -3'
miRNA:   3'- -CGGcCACCG---CCGgUGCa-----GCCGCUUCC- -5'
26563 3' -61.1 NC_005357.1 + 13749 0.69 0.246993
Target:  5'- -aCGacGUGGCGcGCCGCGcUGGCGAGGc -3'
miRNA:   3'- cgGC--CACCGC-CGGUGCaGCCGCUUCc -5'
26563 3' -61.1 NC_005357.1 + 14738 0.69 0.246993
Target:  5'- uGCCGGcGcGCGGCC-UGUauuccaagaccaCGGUGGAGGu -3'
miRNA:   3'- -CGGCCaC-CGCCGGuGCA------------GCCGCUUCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.