miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26563 5' -52.7 NC_005357.1 + 29315 0.66 0.809113
Target:  5'- -cCCaGCACUucAAGGCgGUGGCGGUCGc -3'
miRNA:   3'- caGGaCGUGGc-UUUUG-CACUGCCAGC- -5'
26563 5' -52.7 NC_005357.1 + 7470 0.66 0.809113
Target:  5'- --gCUGCGCCGcgua-GUGGCGGUgGu -3'
miRNA:   3'- cagGACGUGGCuuuugCACUGCCAgC- -5'
26563 5' -52.7 NC_005357.1 + 36054 0.66 0.799276
Target:  5'- -gCCUGCGCCuGAuugccGACGUGGgcCGGUUc -3'
miRNA:   3'- caGGACGUGG-CUu----UUGCACU--GCCAGc -5'
26563 5' -52.7 NC_005357.1 + 13559 0.66 0.789252
Target:  5'- -gCCaGCAgCGAGGACGUGGCGcGgCGc -3'
miRNA:   3'- caGGaCGUgGCUUUUGCACUGC-CaGC- -5'
26563 5' -52.7 NC_005357.1 + 6245 0.66 0.779056
Target:  5'- -gCCUGCacGCCGguAACGguGCGGUUGa -3'
miRNA:   3'- caGGACG--UGGCuuUUGCacUGCCAGC- -5'
26563 5' -52.7 NC_005357.1 + 14918 0.67 0.75819
Target:  5'- -aCC-GCGCCGAGAAgcUGGCGGcCGa -3'
miRNA:   3'- caGGaCGUGGCUUUUgcACUGCCaGC- -5'
26563 5' -52.7 NC_005357.1 + 23912 0.67 0.747546
Target:  5'- -cCCgcgGCuuccauGCCGGcauAGGCGUGAUGGUCa -3'
miRNA:   3'- caGGa--CG------UGGCU---UUUGCACUGCCAGc -5'
26563 5' -52.7 NC_005357.1 + 10566 0.67 0.747546
Target:  5'- gGUCUUGCACggCGAGGGCGUGcCGcaggaauucuucGUCGg -3'
miRNA:   3'- -CAGGACGUG--GCUUUUGCACuGC------------CAGC- -5'
26563 5' -52.7 NC_005357.1 + 31208 0.68 0.703852
Target:  5'- -gCgUGgG-CGGGAACGUGGCGGUCa -3'
miRNA:   3'- caGgACgUgGCUUUUGCACUGCCAGc -5'
26563 5' -52.7 NC_005357.1 + 38641 0.68 0.692712
Target:  5'- aUgCUGC-CCGAccguacCGUGugGGUCGa -3'
miRNA:   3'- cAgGACGuGGCUuuu---GCACugCCAGC- -5'
26563 5' -52.7 NC_005357.1 + 23622 0.68 0.68151
Target:  5'- uUCCUGCGCCGccAGAUcaccaacaagGUGGCGGccUCGa -3'
miRNA:   3'- cAGGACGUGGCu-UUUG----------CACUGCC--AGC- -5'
26563 5' -52.7 NC_005357.1 + 11163 0.68 0.670258
Target:  5'- -gCCUGCGCaCGuu-GCGUGcGCuGGUCGg -3'
miRNA:   3'- caGGACGUG-GCuuuUGCAC-UG-CCAGC- -5'
26563 5' -52.7 NC_005357.1 + 14144 0.68 0.670258
Target:  5'- aGUUCUGCGCCGugucccAGCGc-GCGGUCa -3'
miRNA:   3'- -CAGGACGUGGCuu----UUGCacUGCCAGc -5'
26563 5' -52.7 NC_005357.1 + 29435 0.69 0.647652
Target:  5'- -gCCUGUA-CGAGAACGgcgGGCGGUUu -3'
miRNA:   3'- caGGACGUgGCUUUUGCa--CUGCCAGc -5'
26563 5' -52.7 NC_005357.1 + 4268 0.69 0.613656
Target:  5'- cGUCa-GCGCCGgcAugGUGAUGGcCGu -3'
miRNA:   3'- -CAGgaCGUGGCuuUugCACUGCCaGC- -5'
26563 5' -52.7 NC_005357.1 + 27899 0.7 0.579812
Target:  5'- uGUCCgGCGCCGgcGACGUGGCugauuccuGGUa- -3'
miRNA:   3'- -CAGGaCGUGGCuuUUGCACUG--------CCAgc -5'
26563 5' -52.7 NC_005357.1 + 27142 0.7 0.535366
Target:  5'- cGUCCUGuCGCCGAAAugG-GGCGacagCGg -3'
miRNA:   3'- -CAGGAC-GUGGCUUUugCaCUGCca--GC- -5'
26563 5' -52.7 NC_005357.1 + 36268 0.71 0.524433
Target:  5'- -gCCUGCGCUGGGAAgaUGACGG-CGg -3'
miRNA:   3'- caGGACGUGGCUUUUgcACUGCCaGC- -5'
26563 5' -52.7 NC_005357.1 + 2503 0.74 0.338913
Target:  5'- aGUCCUGCAacCCGuucgggcuGGGCGUGcCGGUCa -3'
miRNA:   3'- -CAGGACGU--GGCu-------UUUGCACuGCCAGc -5'
26563 5' -52.7 NC_005357.1 + 18265 0.75 0.322356
Target:  5'- -aCCUGCGCCGAGAACuUGcCGGcCGu -3'
miRNA:   3'- caGGACGUGGCUUUUGcACuGCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.