Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26564 | 5' | -51.2 | NC_005357.1 | + | 24425 | 0.66 | 0.862606 |
Target: 5'- --aGGUUCGGACGacaaGUCCgGCGgcgacUUGGUg -3' miRNA: 3'- cagUCAAGCCUGUg---CAGG-UGU-----AACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 21284 | 0.66 | 0.835887 |
Target: 5'- -cCAGggcgCGGACACGgcggCCAagcugGGCa -3' miRNA: 3'- caGUCaa--GCCUGUGCa---GGUguaa-CCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 5245 | 0.66 | 0.879123 |
Target: 5'- -gCAGUUCGGccgGCAgGUCgGgGUcGGCa -3' miRNA: 3'- caGUCAAGCC---UGUgCAGgUgUAaCCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 25622 | 0.66 | 0.879123 |
Target: 5'- -gCGGcgCGGucgccagcaGCGCGUCCACcucGGCg -3' miRNA: 3'- caGUCaaGCC---------UGUGCAGGUGuaaCCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 16055 | 0.66 | 0.862606 |
Target: 5'- -cCAGUUCGcGCACGUggccgCCGCGcgcGGCg -3' miRNA: 3'- caGUCAAGCcUGUGCA-----GGUGUaa-CCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 24619 | 0.66 | 0.85395 |
Target: 5'- gGUCAG--CGG-CACGUcgaaCCACAU-GGCg -3' miRNA: 3'- -CAGUCaaGCCuGUGCA----GGUGUAaCCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 23686 | 0.66 | 0.839577 |
Target: 5'- gGUCGGgcCGGACACGUacaggccgguagcgcCCAgGUcgcgGGCc -3' miRNA: 3'- -CAGUCaaGCCUGUGCA---------------GGUgUAa---CCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 35440 | 0.66 | 0.84504 |
Target: 5'- aUCGGgcgCGGACGCGcuUCCGCgaacucaacgaGUUGcGCa -3' miRNA: 3'- cAGUCaa-GCCUGUGC--AGGUG-----------UAAC-CG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 11379 | 0.66 | 0.871 |
Target: 5'- ---uGUUCGGGCcuuCG-CgCACGUUGGCc -3' miRNA: 3'- caguCAAGCCUGu--GCaG-GUGUAACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 9441 | 0.67 | 0.816888 |
Target: 5'- cGUCG--UUGGuCGCGUCCACGccgagGGCc -3' miRNA: 3'- -CAGUcaAGCCuGUGCAGGUGUaa---CCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 5223 | 0.67 | 0.78683 |
Target: 5'- cGUCgAGgaugUUGGACgccacgguguugACGUUgGCGUUGGCa -3' miRNA: 3'- -CAG-UCa---AGCCUG------------UGCAGgUGUAACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 29208 | 0.67 | 0.826499 |
Target: 5'- -gCAGgUCGGACGCG--CGCAU-GGCg -3' miRNA: 3'- caGUCaAGCCUGUGCagGUGUAaCCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 6874 | 0.67 | 0.826499 |
Target: 5'- -cCAcgUCGG-CACGUCCACcAUcugcUGGCa -3' miRNA: 3'- caGUcaAGCCuGUGCAGGUG-UA----ACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 14571 | 0.67 | 0.797042 |
Target: 5'- --gAGcgCGGACACGUUCuugaGCAgcGGCg -3' miRNA: 3'- cagUCaaGCCUGUGCAGG----UGUaaCCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 21600 | 0.68 | 0.776443 |
Target: 5'- gGUCAucugCGGAUugGUgC-CGUUGGCg -3' miRNA: 3'- -CAGUcaa-GCCUGugCAgGuGUAACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 18400 | 0.68 | 0.733394 |
Target: 5'- -cCGGUggCGGcCACGUCgGCGaaggUGGCg -3' miRNA: 3'- caGUCAa-GCCuGUGCAGgUGUa---ACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 29487 | 0.69 | 0.699896 |
Target: 5'- -cCAGUuccgcgUCGGuCGUGUCCACGUcaaUGGCg -3' miRNA: 3'- caGUCA------AGCCuGUGCAGGUGUA---ACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 19864 | 0.7 | 0.665751 |
Target: 5'- gGUgAGUUCGGGCgugccgaagGCGUCgCGCGccuucUUGGCc -3' miRNA: 3'- -CAgUCAAGCCUG---------UGCAG-GUGU-----AACCG- -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 21743 | 0.71 | 0.58541 |
Target: 5'- cGUUGGgcgCGGcCGCGUCCACAUaGGa -3' miRNA: 3'- -CAGUCaa-GCCuGUGCAGGUGUAaCCg -5' |
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26564 | 5' | -51.2 | NC_005357.1 | + | 15371 | 0.73 | 0.464334 |
Target: 5'- uUCAccUCGGugaGCGCGUCCGCGUgcgGGCc -3' miRNA: 3'- cAGUcaAGCC---UGUGCAGGUGUAa--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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