Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26565 | 5' | -56 | NC_005357.1 | + | 13615 | 0.66 | 0.603917 |
Target: 5'- cCUUGCCGACa-GCaUCGGUAgcggcagcaaguccGGCGCg -3' miRNA: 3'- uGAGCGGUUGaaCG-AGCCGUa-------------CCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 4265 | 0.66 | 0.59943 |
Target: 5'- gGC-CGUCAGC--GC-CGGCAUGGUGa -3' miRNA: 3'- -UGaGCGGUUGaaCGaGCCGUACCGCg -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 11772 | 0.66 | 0.59943 |
Target: 5'- ---aGCgGAUUUGC-CGGCAgaaUGGUGCc -3' miRNA: 3'- ugagCGgUUGAACGaGCCGU---ACCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 16035 | 0.66 | 0.59943 |
Target: 5'- uGCUgGCCGAgaaGUUCGaGCAguccaagGGCGCg -3' miRNA: 3'- -UGAgCGGUUgaaCGAGC-CGUa------CCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 32625 | 0.66 | 0.59943 |
Target: 5'- --aCGCUgcuuGACUgGUUCGGCGUG-CGCg -3' miRNA: 3'- ugaGCGG----UUGAaCGAGCCGUACcGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 215 | 0.66 | 0.588234 |
Target: 5'- cACg-GCgAACUggcgcacCUCGGCAuUGGCGCg -3' miRNA: 3'- -UGagCGgUUGAac-----GAGCCGU-ACCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 23722 | 0.66 | 0.588234 |
Target: 5'- -gUCGCgGGCcagUGcCUCGGU--GGCGCg -3' miRNA: 3'- ugAGCGgUUGa--AC-GAGCCGuaCCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 4809 | 0.66 | 0.588234 |
Target: 5'- ---gGCCAGCUUGUagaggUCGGgGccGGCGCc -3' miRNA: 3'- ugagCGGUUGAACG-----AGCCgUa-CCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 38785 | 0.66 | 0.587116 |
Target: 5'- uGCUUGUggacguggggUAACgaGUUCGGCGgcgugaaUGGCGCa -3' miRNA: 3'- -UGAGCG----------GUUGaaCGAGCCGU-------ACCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 38394 | 0.66 | 0.587116 |
Target: 5'- gGCUgCGCuCGACccGCgCGGCAUgacgcugguggccGGCGCg -3' miRNA: 3'- -UGA-GCG-GUUGaaCGaGCCGUA-------------CCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 24698 | 0.66 | 0.583766 |
Target: 5'- uUUCGCCAccaaaugcgcgcaGCUUGCcgcgaUgGGCAuuucccggcccgagUGGCGCu -3' miRNA: 3'- uGAGCGGU-------------UGAACG-----AgCCGU--------------ACCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 26159 | 0.66 | 0.577077 |
Target: 5'- gGCUCGCCGuc-UGCgaugCGGUcgcagauuucgGUGGCGa -3' miRNA: 3'- -UGAGCGGUugaACGa---GCCG-----------UACCGCg -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 15589 | 0.66 | 0.577077 |
Target: 5'- aAUUCGCCcGCUccaUCGGgGcGGCGCa -3' miRNA: 3'- -UGAGCGGuUGAacgAGCCgUaCCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 16877 | 0.66 | 0.577077 |
Target: 5'- --aCGCCGACaucaUCGGCuacgggGGCGCu -3' miRNA: 3'- ugaGCGGUUGaacgAGCCGua----CCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 16793 | 0.66 | 0.577077 |
Target: 5'- aACUCGCCGAggUGgaCGcGCugcUGGCGa -3' miRNA: 3'- -UGAGCGGUUgaACgaGC-CGu--ACCGCg -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 14147 | 0.66 | 0.577077 |
Target: 5'- uCUgCGCCGugUcccaGCgcgCGGuCAUGGUGCg -3' miRNA: 3'- uGA-GCGGUugAa---CGa--GCC-GUACCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 25828 | 0.66 | 0.577077 |
Target: 5'- gGCggCGCCAACaccaucgcgUGgUCGGCcucguccGGCGCg -3' miRNA: 3'- -UGa-GCGGUUGa--------ACgAGCCGua-----CCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 34197 | 0.66 | 0.565967 |
Target: 5'- cUUCGCCGACgaggGCaCGGCc--GCGCa -3' miRNA: 3'- uGAGCGGUUGaa--CGaGCCGuacCGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 1099 | 0.66 | 0.565967 |
Target: 5'- cUUgGCCGugUcGCgCGGCAUGucGCGCa -3' miRNA: 3'- uGAgCGGUugAaCGaGCCGUAC--CGCG- -5' |
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26565 | 5' | -56 | NC_005357.1 | + | 18520 | 0.66 | 0.565967 |
Target: 5'- --aUGCCGGCauggaaGCcgCgGGCGUGGCGCa -3' miRNA: 3'- ugaGCGGUUGaa----CGa-G-CCGUACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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