miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26566 3' -54.4 NC_005357.1 + 7777 0.66 0.725787
Target:  5'- cUCGCGCCUuc---GCCcuGCGAGGCGAu -3'
miRNA:   3'- -GGCGCGGGuccaaCGGu-UGCUUUGCU- -5'
26566 3' -54.4 NC_005357.1 + 30335 0.66 0.725787
Target:  5'- aCCGUGCUCAaccaGCCGAagGAAGCGAa -3'
miRNA:   3'- -GGCGCGGGUccaaCGGUUg-CUUUGCU- -5'
26566 3' -54.4 NC_005357.1 + 8555 0.66 0.725787
Target:  5'- gCCGCGCCgAuGGcgGgCAGCGAcaggcGCGAc -3'
miRNA:   3'- -GGCGCGGgU-CCaaCgGUUGCUu----UGCU- -5'
26566 3' -54.4 NC_005357.1 + 25548 0.66 0.714948
Target:  5'- -aGCGCCCccGUaGCCGAUGAuguCGGc -3'
miRNA:   3'- ggCGCGGGucCAaCGGUUGCUuu-GCU- -5'
26566 3' -54.4 NC_005357.1 + 33064 0.66 0.714948
Target:  5'- gUGCGCUucauCGGGUcGCgCAGCGAcGCGGc -3'
miRNA:   3'- gGCGCGG----GUCCAaCG-GUUGCUuUGCU- -5'
26566 3' -54.4 NC_005357.1 + 39783 0.66 0.693028
Target:  5'- aCCGCugGCCCuuccgcaaaguGGUgGCUGACGAaucGACGAa -3'
miRNA:   3'- -GGCG--CGGGu----------CCAaCGGUUGCU---UUGCU- -5'
26566 3' -54.4 NC_005357.1 + 11931 0.66 0.693028
Target:  5'- gCCGUGCCCAGGcUGgaCAGuacCGAcuCGAu -3'
miRNA:   3'- -GGCGCGGGUCCaACg-GUU---GCUuuGCU- -5'
26566 3' -54.4 NC_005357.1 + 25141 0.66 0.681971
Target:  5'- gCGCGCCCGcGgcGCCGGCuucguGGACGGc -3'
miRNA:   3'- gGCGCGGGUcCaaCGGUUGc----UUUGCU- -5'
26566 3' -54.4 NC_005357.1 + 33231 0.66 0.681971
Target:  5'- gCCGCGCCgCcgAGcagGCCAACGucGACGGc -3'
miRNA:   3'- -GGCGCGG-G--UCcaaCGGUUGCu-UUGCU- -5'
26566 3' -54.4 NC_005357.1 + 9464 0.67 0.670865
Target:  5'- -gGCGUCCGGGUcuUGCCAGuaauCGAcGCa- -3'
miRNA:   3'- ggCGCGGGUCCA--ACGGUU----GCUuUGcu -5'
26566 3' -54.4 NC_005357.1 + 8857 0.67 0.670865
Target:  5'- gCGCguugGCCUcGGUcGCC-ACGAAGCGGg -3'
miRNA:   3'- gGCG----CGGGuCCAaCGGuUGCUUUGCU- -5'
26566 3' -54.4 NC_005357.1 + 41358 0.67 0.659721
Target:  5'- aCGCGCgCCGGGUcGCaCAggaaauccGCG-AGCGAa -3'
miRNA:   3'- gGCGCG-GGUCCAaCG-GU--------UGCuUUGCU- -5'
26566 3' -54.4 NC_005357.1 + 31521 0.67 0.659721
Target:  5'- gCUGgGCCUcgcuGuGUUGCCGugGAAACa- -3'
miRNA:   3'- -GGCgCGGGu---C-CAACGGUugCUUUGcu -5'
26566 3' -54.4 NC_005357.1 + 30084 0.67 0.648551
Target:  5'- gCgGCGCCCGGGc-GCCA-CGGcccuugucccaGGCGAu -3'
miRNA:   3'- -GgCGCGGGUCCaaCGGUuGCU-----------UUGCU- -5'
26566 3' -54.4 NC_005357.1 + 39707 0.67 0.648551
Target:  5'- gCCGCGCUCaAGcGUccgGCCAACGuguucaccACGAa -3'
miRNA:   3'- -GGCGCGGG-UC-CAa--CGGUUGCuu------UGCU- -5'
26566 3' -54.4 NC_005357.1 + 5534 0.67 0.637365
Target:  5'- gCCGCccagguuccGCCCAGGUcGCCcgccACGGuaucGACGGc -3'
miRNA:   3'- -GGCG---------CGGGUCCAaCGGu---UGCU----UUGCU- -5'
26566 3' -54.4 NC_005357.1 + 28790 0.67 0.637365
Target:  5'- gCGCuuGCCCuGGUUGCCGAUcuuGAGCa- -3'
miRNA:   3'- gGCG--CGGGuCCAACGGUUGc--UUUGcu -5'
26566 3' -54.4 NC_005357.1 + 14829 0.67 0.637365
Target:  5'- gCCuuCGCCCAGGUcgaUGCCGuugGCGGccAGCGc -3'
miRNA:   3'- -GGc-GCGGGUCCA---ACGGU---UGCU--UUGCu -5'
26566 3' -54.4 NC_005357.1 + 29258 0.67 0.636246
Target:  5'- -gGCGCCCAGcGcgGCCGAcacuggccgacauCGAGGCGc -3'
miRNA:   3'- ggCGCGGGUC-CaaCGGUU-------------GCUUUGCu -5'
26566 3' -54.4 NC_005357.1 + 39548 0.67 0.634008
Target:  5'- uCUGUGCCCAucaccuucuugcauGGcucUGCCAACGcuACGGc -3'
miRNA:   3'- -GGCGCGGGU--------------CCa--ACGGUUGCuuUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.