miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26566 5' -58.5 NC_005357.1 + 27414 0.66 0.457699
Target:  5'- -gUCGUCGCGcgccUGGCGCaccGCgcccgGcGGCCg -3'
miRNA:   3'- caAGCAGCGUu---ACCGCG---CGa----C-CCGGa -5'
26566 5' -58.5 NC_005357.1 + 35842 0.66 0.457699
Target:  5'- --aCGUgGUGccGGcCGUGCUGGGCUa -3'
miRNA:   3'- caaGCAgCGUuaCC-GCGCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 27972 0.66 0.447755
Target:  5'- --aCGUC-Cuc-GGUGgGCUGGGCCa -3'
miRNA:   3'- caaGCAGcGuuaCCGCgCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 8574 0.66 0.437932
Target:  5'- uGggCGUCGUA--GGcCGCGCgUGcGGCCUg -3'
miRNA:   3'- -CaaGCAGCGUuaCC-GCGCG-AC-CCGGA- -5'
26566 5' -58.5 NC_005357.1 + 17297 0.66 0.432098
Target:  5'- --gCGcCGCg--GGCGCGCauccauuccggcauaUGGGCCg -3'
miRNA:   3'- caaGCaGCGuuaCCGCGCG---------------ACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 31504 0.66 0.428234
Target:  5'- -cUUGcCGCc--GGCGUgcuGCUGGGCCUc -3'
miRNA:   3'- caAGCaGCGuuaCCGCG---CGACCCGGA- -5'
26566 5' -58.5 NC_005357.1 + 22473 0.66 0.428234
Target:  5'- -gUUGUCagGCGGaaccaggGGCGgGCUGGGCUg -3'
miRNA:   3'- caAGCAG--CGUUa------CCGCgCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 4232 0.66 0.427271
Target:  5'- -aUCGUCGCAgacguagAUGGCGUaGUcGGuGCCg -3'
miRNA:   3'- caAGCAGCGU-------UACCGCG-CGaCC-CGGa -5'
26566 5' -58.5 NC_005357.1 + 14415 0.66 0.415819
Target:  5'- uGggCGUCGCca-GGCGCGCcugcggcaccguguUGGGCg- -3'
miRNA:   3'- -CaaGCAGCGuuaCCGCGCG--------------ACCCGga -5'
26566 5' -58.5 NC_005357.1 + 1765 0.67 0.409226
Target:  5'- --cCGgccugCGCc-UGGCGCGUcGGGCCg -3'
miRNA:   3'- caaGCa----GCGuuACCGCGCGaCCCGGa -5'
26566 5' -58.5 NC_005357.1 + 14308 0.67 0.409226
Target:  5'- -gUCGUUGCugaacUGGCGCGCgccuuGGCUg -3'
miRNA:   3'- caAGCAGCGuu---ACCGCGCGac---CCGGa -5'
26566 5' -58.5 NC_005357.1 + 14038 0.67 0.394403
Target:  5'- -gUCGUUGgAAUGGagcgcgaaagcccgGCGCUGGGCg- -3'
miRNA:   3'- caAGCAGCgUUACCg-------------CGCGACCCGga -5'
26566 5' -58.5 NC_005357.1 + 20475 0.67 0.390752
Target:  5'- -gUCGUuccgCGCAcuGUGccCGCGUUGGGCCUu -3'
miRNA:   3'- caAGCA----GCGU--UACc-GCGCGACCCGGA- -5'
26566 5' -58.5 NC_005357.1 + 26132 0.67 0.364083
Target:  5'- uGUUCGUCGCGGcagauuUGGCGCaGC-GGcucGCCg -3'
miRNA:   3'- -CAAGCAGCGUU------ACCGCG-CGaCC---CGGa -5'
26566 5' -58.5 NC_005357.1 + 35334 0.67 0.364083
Target:  5'- -aUCGUgCGCGugGGCGCGCcgUGGGUa- -3'
miRNA:   3'- caAGCA-GCGUuaCCGCGCG--ACCCGga -5'
26566 5' -58.5 NC_005357.1 + 30138 0.67 0.364083
Target:  5'- --cCGcCGUAGccGGCaCGCUGGGCCa -3'
miRNA:   3'- caaGCaGCGUUa-CCGcGCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 39671 0.68 0.358902
Target:  5'- --gUGUCgGCAGUGGUcggcacgcccgagcaGCGCcGGGCCg -3'
miRNA:   3'- caaGCAG-CGUUACCG---------------CGCGaCCCGGa -5'
26566 5' -58.5 NC_005357.1 + 11183 0.68 0.355477
Target:  5'- --aCGUCGCcc-GGCucguaGCUGGGCCg -3'
miRNA:   3'- caaGCAGCGuuaCCGcg---CGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 15689 0.68 0.355477
Target:  5'- ----aUCGCAGcgGGCGCGCUGgcgguGGCCc -3'
miRNA:   3'- caagcAGCGUUa-CCGCGCGAC-----CCGGa -5'
26566 5' -58.5 NC_005357.1 + 24629 0.68 0.3387
Target:  5'- --aCGUCGaaccacAUGGCGUGCcggcGGGCCa -3'
miRNA:   3'- caaGCAGCgu----UACCGCGCGa---CCCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.