miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26566 5' -58.5 NC_005357.1 + 21377 1.08 0.000368
Target:  5'- aGUUCGUCGCAAUGGCGCGCUGGGCCUg -3'
miRNA:   3'- -CAAGCAGCGUUACCGCGCGACCCGGA- -5'
26566 5' -58.5 NC_005357.1 + 18064 0.73 0.14994
Target:  5'- --cCGgCGCGggGuGCGUGCUGGGCCg -3'
miRNA:   3'- caaGCaGCGUuaC-CGCGCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 37306 0.72 0.180289
Target:  5'- --aCGUUGCAGUucaacGGCGCcagccgcaccggacGCUGGGCCg -3'
miRNA:   3'- caaGCAGCGUUA-----CCGCG--------------CGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 39834 0.72 0.183757
Target:  5'- cGUUCcgGUUGCAAcagGGCggcaagcgcgcgcacGCGCUGGGCCg -3'
miRNA:   3'- -CAAG--CAGCGUUa--CCG---------------CGCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 37748 0.71 0.197156
Target:  5'- -cUCGcCGCGcuauccGGCGCGCUGGuGCCc -3'
miRNA:   3'- caAGCaGCGUua----CCGCGCGACC-CGGa -5'
26566 5' -58.5 NC_005357.1 + 233 0.71 0.213669
Target:  5'- -cUCG--GCAuUGGCGCGCUGGGUUUc -3'
miRNA:   3'- caAGCagCGUuACCGCGCGACCCGGA- -5'
26566 5' -58.5 NC_005357.1 + 9867 0.71 0.213669
Target:  5'- --gCGUgGCAccGGCGCGCUGcuucucGGCCa -3'
miRNA:   3'- caaGCAgCGUuaCCGCGCGAC------CCGGa -5'
26566 5' -58.5 NC_005357.1 + 12900 0.71 0.213669
Target:  5'- -gUCGUCGCcuuUGGCgauGCGCUcGGCCg -3'
miRNA:   3'- caAGCAGCGuu-ACCG---CGCGAcCCGGa -5'
26566 5' -58.5 NC_005357.1 + 36685 0.7 0.231356
Target:  5'- -cUCGcUGCcc-GGCGCGCUGGGCg- -3'
miRNA:   3'- caAGCaGCGuuaCCGCGCGACCCGga -5'
26566 5' -58.5 NC_005357.1 + 7179 0.7 0.243822
Target:  5'- -cUUGUCGgAuucgggGGCGaCGCUGGGCUUg -3'
miRNA:   3'- caAGCAGCgUua----CCGC-GCGACCCGGA- -5'
26566 5' -58.5 NC_005357.1 + 10599 0.68 0.313848
Target:  5'- cUUCGUCGguGagGGUGCGCagguucaUGGGCUUc -3'
miRNA:   3'- cAAGCAGCguUa-CCGCGCG-------ACCCGGA- -5'
26566 5' -58.5 NC_005357.1 + 4512 0.68 0.314628
Target:  5'- cGggCGgCGCccgugaacGUGGCGUGCUGGGCg- -3'
miRNA:   3'- -CaaGCaGCGu-------UACCGCGCGACCCGga -5'
26566 5' -58.5 NC_005357.1 + 24629 0.68 0.3387
Target:  5'- --aCGUCGaaccacAUGGCGUGCcggcGGGCCa -3'
miRNA:   3'- caaGCAGCgu----UACCGCGCGa---CCCGGa -5'
26566 5' -58.5 NC_005357.1 + 11183 0.68 0.355477
Target:  5'- --aCGUCGCcc-GGCucguaGCUGGGCCg -3'
miRNA:   3'- caaGCAGCGuuaCCGcg---CGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 15689 0.68 0.355477
Target:  5'- ----aUCGCAGcgGGCGCGCUGgcgguGGCCc -3'
miRNA:   3'- caagcAGCGUUa-CCGCGCGAC-----CCGGa -5'
26566 5' -58.5 NC_005357.1 + 39671 0.68 0.358902
Target:  5'- --gUGUCgGCAGUGGUcggcacgcccgagcaGCGCcGGGCCg -3'
miRNA:   3'- caaGCAG-CGUUACCG---------------CGCGaCCCGGa -5'
26566 5' -58.5 NC_005357.1 + 30138 0.67 0.364083
Target:  5'- --cCGcCGUAGccGGCaCGCUGGGCCa -3'
miRNA:   3'- caaGCaGCGUUa-CCGcGCGACCCGGa -5'
26566 5' -58.5 NC_005357.1 + 35334 0.67 0.364083
Target:  5'- -aUCGUgCGCGugGGCGCGCcgUGGGUa- -3'
miRNA:   3'- caAGCA-GCGUuaCCGCGCG--ACCCGga -5'
26566 5' -58.5 NC_005357.1 + 26132 0.67 0.364083
Target:  5'- uGUUCGUCGCGGcagauuUGGCGCaGC-GGcucGCCg -3'
miRNA:   3'- -CAAGCAGCGUU------ACCGCG-CGaCC---CGGa -5'
26566 5' -58.5 NC_005357.1 + 20475 0.67 0.390752
Target:  5'- -gUCGUuccgCGCAcuGUGccCGCGUUGGGCCUu -3'
miRNA:   3'- caAGCA----GCGU--UACc-GCGCGACCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.