miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26567 3' -58.2 NC_005357.1 + 1877 0.66 0.505968
Target:  5'- gCCCGugGCcGGCGCuggccgGGUGgGC-GAACa -3'
miRNA:   3'- -GGGUugCGcCCGUG------UCACgCGcCUUG- -5'
26567 3' -58.2 NC_005357.1 + 39131 0.66 0.505968
Target:  5'- uCCCAuuGCGCaaagcaucccgaGGaaGCACGGcguUGCGCGGGAa -3'
miRNA:   3'- -GGGU--UGCG------------CC--CGUGUC---ACGCGCCUUg -5'
26567 3' -58.2 NC_005357.1 + 5861 0.66 0.505968
Target:  5'- gCUAuUGUGGGCGCAGaGCGCGa--- -3'
miRNA:   3'- gGGUuGCGCCCGUGUCaCGCGCcuug -5'
26567 3' -58.2 NC_005357.1 + 17700 0.66 0.505968
Target:  5'- gCC-GCGCaGGCGCGGUGgaaGCGGcccGACc -3'
miRNA:   3'- gGGuUGCGcCCGUGUCACg--CGCC---UUG- -5'
26567 3' -58.2 NC_005357.1 + 17177 0.66 0.504929
Target:  5'- -gCAGCGCGaGCAacaGGUGCGCuucgucaugggcuGGAACc -3'
miRNA:   3'- ggGUUGCGCcCGUg--UCACGCG-------------CCUUG- -5'
26567 3' -58.2 NC_005357.1 + 9828 0.66 0.502855
Target:  5'- gCCCuuGACGCGGGCcagcuuggucACAGcgucgGCGguguccugauacguCGGAGCg -3'
miRNA:   3'- -GGG--UUGCGCCCG----------UGUCa----CGC--------------GCCUUG- -5'
26567 3' -58.2 NC_005357.1 + 25084 0.66 0.495623
Target:  5'- aCCCAGCGCaGcGCGCccgGCGCcguGGGAUa -3'
miRNA:   3'- -GGGUUGCGcC-CGUGucaCGCG---CCUUG- -5'
26567 3' -58.2 NC_005357.1 + 34255 0.66 0.485376
Target:  5'- gCCGGCagcaucCGGGCGCAc-GCGCaGGGACg -3'
miRNA:   3'- gGGUUGc-----GCCCGUGUcaCGCG-CCUUG- -5'
26567 3' -58.2 NC_005357.1 + 41611 0.66 0.475231
Target:  5'- gCCGACGUucggcaagggcuGGGCGCGGcGCGUcgccGGAAa -3'
miRNA:   3'- gGGUUGCG------------CCCGUGUCaCGCG----CCUUg -5'
26567 3' -58.2 NC_005357.1 + 31889 0.66 0.475231
Target:  5'- aCCCGuuGCGCGuGGCgGCGGaaaGCGUGGccGGCg -3'
miRNA:   3'- -GGGU--UGCGC-CCG-UGUCa--CGCGCC--UUG- -5'
26567 3' -58.2 NC_005357.1 + 7378 0.66 0.475231
Target:  5'- gUCCAGCgGCGGGCAC----CGCGGcGACc -3'
miRNA:   3'- -GGGUUG-CGCCCGUGucacGCGCC-UUG- -5'
26567 3' -58.2 NC_005357.1 + 24063 0.66 0.475231
Target:  5'- uUCC-AUGCcGcGCACAGUagcggcgaccGCGCGGGGCa -3'
miRNA:   3'- -GGGuUGCGcC-CGUGUCA----------CGCGCCUUG- -5'
26567 3' -58.2 NC_005357.1 + 22301 0.66 0.475231
Target:  5'- cCCCGAagGCGuGGCauucgacgACGGUGUGCuGGGCg -3'
miRNA:   3'- -GGGUUg-CGC-CCG--------UGUCACGCGcCUUG- -5'
26567 3' -58.2 NC_005357.1 + 35991 0.67 0.455265
Target:  5'- gCCuuCGCGGGCGguG-GUGuCGcGAGCg -3'
miRNA:   3'- gGGuuGCGCCCGUguCaCGC-GC-CUUG- -5'
26567 3' -58.2 NC_005357.1 + 3741 0.67 0.426192
Target:  5'- gCCgGugGUGGGCACgucGGUGCcgccGCuGGACg -3'
miRNA:   3'- -GGgUugCGCCCGUG---UCACG----CGcCUUG- -5'
26567 3' -58.2 NC_005357.1 + 8841 0.67 0.416749
Target:  5'- gCCgCAACGCGGGC-CAGcGCGuUGGc-- -3'
miRNA:   3'- -GG-GUUGCGCCCGuGUCaCGC-GCCuug -5'
26567 3' -58.2 NC_005357.1 + 13784 0.67 0.416749
Target:  5'- aCCGAU-CuGGCACuGcGCGCGGAACu -3'
miRNA:   3'- gGGUUGcGcCCGUGuCaCGCGCCUUG- -5'
26567 3' -58.2 NC_005357.1 + 34886 0.67 0.407435
Target:  5'- aCCCGGCcGCGaGC-CAGcGUGCGGAAg -3'
miRNA:   3'- -GGGUUG-CGCcCGuGUCaCGCGCCUUg -5'
26567 3' -58.2 NC_005357.1 + 31031 0.67 0.40651
Target:  5'- gCCGaggcaaucGCGCGGGC-CAacGUGCGCGaaggcccGAACa -3'
miRNA:   3'- gGGU--------UGCGCCCGuGU--CACGCGC-------CUUG- -5'
26567 3' -58.2 NC_005357.1 + 8560 0.68 0.398251
Target:  5'- gCCgAugGCGGGCagcgACAG-GCGCGacACg -3'
miRNA:   3'- -GGgUugCGCCCG----UGUCaCGCGCcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.