Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26568 | 5' | -57.4 | NC_005357.1 | + | 17438 | 0.66 | 0.565919 |
Target: 5'- aGCAGUggccCCGCcAGCaucgaggccagGUGCCacgCCAGGg -3' miRNA: 3'- -CGUCAa---GGCGcUCG-----------CGCGGaa-GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 37888 | 0.66 | 0.559437 |
Target: 5'- cCAGUUCCGCGgcggcacgaccgcccAGCaCGCCacgUCaCGGGc -3' miRNA: 3'- cGUCAAGGCGC---------------UCGcGCGGa--AG-GUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 35326 | 0.66 | 0.555127 |
Target: 5'- cGCAGUccaucgugCgCGUGGGCGCGCCgugggUAGGc -3' miRNA: 3'- -CGUCAa-------G-GCGCUCGCGCGGaag--GUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 3513 | 0.66 | 0.554051 |
Target: 5'- cGCAG---CGCGAGaacccgagagcgaCGUGCCgUUCCAGGc -3' miRNA: 3'- -CGUCaagGCGCUC-------------GCGCGG-AAGGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 14812 | 0.66 | 0.544396 |
Target: 5'- uGCAccUCgGCG-GCGCuGCCUUcgcCCAGGu -3' miRNA: 3'- -CGUcaAGgCGCuCGCG-CGGAA---GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 34253 | 0.66 | 0.544396 |
Target: 5'- gGCAGga-CGCca--GCGCCUUCCuGGg -3' miRNA: 3'- -CGUCaagGCGcucgCGCGGAAGGuCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 28642 | 0.66 | 0.544396 |
Target: 5'- cCAGUUCCGCGcGCaGUGCCagaucggugCCGGcGg -3' miRNA: 3'- cGUCAAGGCGCuCG-CGCGGaa-------GGUC-C- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 21250 | 0.66 | 0.533733 |
Target: 5'- aGCAGcaggCCGCGcAGCaggccGCGCUguugaaCCAGGg -3' miRNA: 3'- -CGUCaa--GGCGC-UCG-----CGCGGaa----GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 32637 | 0.66 | 0.51264 |
Target: 5'- -uGGUUCgGCGuGCGCGaCCUggccgCguGGa -3' miRNA: 3'- cgUCAAGgCGCuCGCGC-GGAa----GguCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 12956 | 0.67 | 0.502222 |
Target: 5'- cGCGGaacuggCCGCGcGCucguCGCCUggugCCAGGa -3' miRNA: 3'- -CGUCaa----GGCGCuCGc---GCGGAa---GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 15084 | 0.67 | 0.492926 |
Target: 5'- uGCAGgcugcuuugCUGCGAccGCGCGCCguaauagcugccuaCCAGGc -3' miRNA: 3'- -CGUCaa-------GGCGCU--CGCGCGGaa------------GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 15001 | 0.67 | 0.491898 |
Target: 5'- uGCGG--CCGcCGGGCGCGgUgcgCCAGGc -3' miRNA: 3'- -CGUCaaGGC-GCUCGCGCgGaa-GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 18525 | 0.67 | 0.491898 |
Target: 5'- gGCAuGgaagCCGCGGGCgugGCGCaCUUCCuuGGc -3' miRNA: 3'- -CGU-Caa--GGCGCUCG---CGCG-GAAGGu-CC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 21550 | 0.67 | 0.490871 |
Target: 5'- uCGGUUCCGUGGucgaaaucacggcGCGCGCCgucgUgCAGu -3' miRNA: 3'- cGUCAAGGCGCU-------------CGCGCGGa---AgGUCc -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 18274 | 0.67 | 0.481673 |
Target: 5'- cGCAG--CCGuCGAG-GCGCUgggCCAGGc -3' miRNA: 3'- -CGUCaaGGC-GCUCgCGCGGaa-GGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 15509 | 0.67 | 0.475587 |
Target: 5'- uGCAGUUCUGCGgugaugGGCaggccgauaugcacgGUGCCggccuccacgUCCAGGu -3' miRNA: 3'- -CGUCAAGGCGC------UCG---------------CGCGGa---------AGGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 41387 | 0.67 | 0.461539 |
Target: 5'- cGCGGcgacaugcugCCGCcGGcCGUgGCCUUCCAGGu -3' miRNA: 3'- -CGUCaa--------GGCGcUC-GCG-CGGAAGGUCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 22217 | 0.67 | 0.461539 |
Target: 5'- aCAGccggCCGCGGGCGCuGCCaagaCCgAGGg -3' miRNA: 3'- cGUCaa--GGCGCUCGCG-CGGaa--GG-UCC- -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 23856 | 0.68 | 0.422662 |
Target: 5'- cCAGgccgucaCCGCGAGCGCGgCCU-CCAc- -3' miRNA: 3'- cGUCaa-----GGCGCUCGCGC-GGAaGGUcc -5' |
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26568 | 5' | -57.4 | NC_005357.1 | + | 19323 | 0.69 | 0.385819 |
Target: 5'- cGCuGUcgCCGUGGGCGCcGCCguuggcgUCGGGg -3' miRNA: 3'- -CGuCAa-GGCGCUCGCG-CGGaa-----GGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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