miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 23768 0.66 0.435049
Target:  5'- -gGCCGGGGgcGgGCGaCCGCcCCCGa -3'
miRNA:   3'- ugCGGUUCCuuCaCGC-GGUGcGGGCg -5'
26569 5' -59.5 NC_005357.1 + 349 0.66 0.435049
Target:  5'- cGCGCagcAGGccGUcCGCCAgGCCCGa -3'
miRNA:   3'- -UGCGgu-UCCuuCAcGCGGUgCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 18561 0.66 0.435049
Target:  5'- cACGUCGGuGGAG----GCCGCGCUCGCg -3'
miRNA:   3'- -UGCGGUU-CCUUcacgCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 35254 0.66 0.425522
Target:  5'- uGCGUCAGGGcgucAGcGCGUCGgGCCUGg -3'
miRNA:   3'- -UGCGGUUCCu---UCaCGCGGUgCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 13556 0.66 0.41612
Target:  5'- uACGCCAgcagcgAGGAcGUgGCGCgGCGCUgGg -3'
miRNA:   3'- -UGCGGU------UCCUuCA-CGCGgUGCGGgCg -5'
26569 5' -59.5 NC_005357.1 + 38854 0.66 0.41612
Target:  5'- -gGCCGcGGAucGGUGUacGCC-CaGCCCGCu -3'
miRNA:   3'- ugCGGUuCCU--UCACG--CGGuG-CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 25126 0.66 0.41612
Target:  5'- uAUGCCGgaauGGAuGcGCGCCcgcgGCGCCgGCu -3'
miRNA:   3'- -UGCGGUu---CCUuCaCGCGG----UGCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 14920 0.66 0.41612
Target:  5'- cGCGCCGA-GAAGcugGCgGCCGaggcCGCCgGCa -3'
miRNA:   3'- -UGCGGUUcCUUCa--CG-CGGU----GCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 22480 0.66 0.406846
Target:  5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3'
miRNA:   3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 34783 0.66 0.397704
Target:  5'- uACGgCAAGGAGccggcGUGggucgaGCCGCGCCCc- -3'
miRNA:   3'- -UGCgGUUCCUU-----CACg-----CGGUGCGGGcg -5'
26569 5' -59.5 NC_005357.1 + 31983 0.66 0.397704
Target:  5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3'
miRNA:   3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5'
26569 5' -59.5 NC_005357.1 + 17268 0.66 0.392282
Target:  5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3'
miRNA:   3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 13189 0.66 0.388694
Target:  5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3'
miRNA:   3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 6295 0.66 0.388694
Target:  5'- gGCGCCGGGGcuuaucuccGGUGCGUgcaagacgcggCGCGuUCCGCc -3'
miRNA:   3'- -UGCGGUUCCu--------UCACGCG-----------GUGC-GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 18684 0.66 0.388694
Target:  5'- gGCGCCGgcauGGcgcugcuGcGCGCCACcgaggcacugGCCCGCg -3'
miRNA:   3'- -UGCGGUu---CCuu-----CaCGCGGUG----------CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 14229 0.66 0.388694
Target:  5'- -gGCCGAccuGGAcaAG-GCGCCGCaCCUGCu -3'
miRNA:   3'- ugCGGUU---CCU--UCaCGCGGUGcGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 17448 0.66 0.388694
Target:  5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3'
miRNA:   3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5'
26569 5' -59.5 NC_005357.1 + 24492 0.66 0.388694
Target:  5'- nCGCC-AGGAAGUcguaggggcugGCGCCcACGCCg-- -3'
miRNA:   3'- uGCGGuUCCUUCA-----------CGCGG-UGCGGgcg -5'
26569 5' -59.5 NC_005357.1 + 38033 0.67 0.379819
Target:  5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3'
miRNA:   3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 25291 0.67 0.379819
Target:  5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3'
miRNA:   3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.