miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 23890 1.11 0.000187
Target:  5'- uACGCCAAGGAAGUGCGCCACGCCCGCg -3'
miRNA:   3'- -UGCGGUUCCUUCACGCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 28211 0.86 0.015534
Target:  5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3'
miRNA:   3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 34995 0.83 0.026378
Target:  5'- cGCGUCGAGGAAGUGU-CCggGCGCCCGCu -3'
miRNA:   3'- -UGCGGUUCCUUCACGcGG--UGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 42205 0.78 0.059594
Target:  5'- cGCGCCAAugccGAGGUGCGCCAguucgccguguCGCCCGg -3'
miRNA:   3'- -UGCGGUUc---CUUCACGCGGU-----------GCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 15006 0.78 0.061336
Target:  5'- cCGCCGGGcGcGGUGCGCCAgGCgCGCg -3'
miRNA:   3'- uGCGGUUC-CuUCACGCGGUgCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 42280 0.76 0.079384
Target:  5'- cCGCCugcgGGGAAGccugGCGCCACGCCguaGCu -3'
miRNA:   3'- uGCGGu---UCCUUCa---CGCGGUGCGGg--CG- -5'
26569 5' -59.5 NC_005357.1 + 33214 0.76 0.081678
Target:  5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3'
miRNA:   3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5'
26569 5' -59.5 NC_005357.1 + 36796 0.75 0.102445
Target:  5'- -aGCCAccAGcAAGcUGCGCCGCGCCaCGCg -3'
miRNA:   3'- ugCGGU--UCcUUC-ACGCGGUGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 20749 0.75 0.102445
Target:  5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3'
miRNA:   3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 24655 0.75 0.108367
Target:  5'- -gGCC-AGGAuGGUGuUGUCGCGCCCGCc -3'
miRNA:   3'- ugCGGuUCCU-UCAC-GCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 8686 0.74 0.117855
Target:  5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3'
miRNA:   3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5'
26569 5' -59.5 NC_005357.1 + 37268 0.74 0.128112
Target:  5'- uCGCCAAGGgcGUGagcaGCgACGgCCGCc -3'
miRNA:   3'- uGCGGUUCCuuCACg---CGgUGCgGGCG- -5'
26569 5' -59.5 NC_005357.1 + 15884 0.73 0.13919
Target:  5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3'
miRNA:   3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5'
26569 5' -59.5 NC_005357.1 + 5753 0.73 0.144654
Target:  5'- cGCGCCGGGcagcGAGUGCGCCAgggccuugaccaucgUGuCCCGCc -3'
miRNA:   3'- -UGCGGUUCc---UUCACGCGGU---------------GC-GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 14622 0.72 0.155326
Target:  5'- cGCGCgCGAGGAcgugcugcGGcUGCGCgGCGCgCGCu -3'
miRNA:   3'- -UGCG-GUUCCU--------UC-ACGCGgUGCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 16371 0.72 0.164014
Target:  5'- uCGCCGAGcgcauGGAGcGCGCC-CGCCgCGCg -3'
miRNA:   3'- uGCGGUUC-----CUUCaCGCGGuGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 33674 0.71 0.187168
Target:  5'- cGCGCgCAAauuccauguugacGGua--GCGCCGCGCCCGCc -3'
miRNA:   3'- -UGCG-GUU-------------CCuucaCGCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 12547 0.71 0.187669
Target:  5'- cAUGCCGGGGggGgugGUGCUAgaccCGUUCGCa -3'
miRNA:   3'- -UGCGGUUCCuuCa--CGCGGU----GCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 1358 0.71 0.187669
Target:  5'- cCGCCAaaGGGAuggugacauAGgGCGCCGCGgCCaCGCg -3'
miRNA:   3'- uGCGGU--UCCU---------UCaCGCGGUGC-GG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 33135 0.71 0.192747
Target:  5'- uCGCCGAGGAAGUcaauGCGCa--GCCgGUg -3'
miRNA:   3'- uGCGGUUCCUUCA----CGCGgugCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.