Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 35678 | 0.71 | 0.202728 |
Target: 5'- uCGCCAAGGAaaAGUgggGCGCCaaggccgACGCCgUGCu -3' miRNA: 3'- uGCGGUUCCU--UCA---CGCGG-------UGCGG-GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18889 | 0.7 | 0.213153 |
Target: 5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3' miRNA: 3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 357 | 0.7 | 0.214277 |
Target: 5'- uCGCCGAccauccGGGUGUGCUugGCCUGCc -3' miRNA: 3'- uGCGGUUcc----UUCACGCGGugCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23468 | 0.7 | 0.214277 |
Target: 5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3' miRNA: 3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 32884 | 0.7 | 0.219973 |
Target: 5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3' miRNA: 3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 24466 | 0.7 | 0.225798 |
Target: 5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3' miRNA: 3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 29090 | 0.7 | 0.229952 |
Target: 5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3' miRNA: 3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 24119 | 0.7 | 0.231752 |
Target: 5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3' miRNA: 3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 4570 | 0.7 | 0.237839 |
Target: 5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3' miRNA: 3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8295 | 0.7 | 0.237839 |
Target: 5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3' miRNA: 3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 34273 | 0.7 | 0.237839 |
Target: 5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3' miRNA: 3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8173 | 0.7 | 0.244059 |
Target: 5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3' miRNA: 3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33530 | 0.69 | 0.250413 |
Target: 5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3' miRNA: 3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33752 | 0.69 | 0.250413 |
Target: 5'- aACGCCGAGGugcGcGCGgCACGCaaugccgaCCGCg -3' miRNA: 3'- -UGCGGUUCCuu-CaCGCgGUGCG--------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 32468 | 0.69 | 0.250413 |
Target: 5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3' miRNA: 3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 10750 | 0.69 | 0.270296 |
Target: 5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3' miRNA: 3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 37920 | 0.69 | 0.270296 |
Target: 5'- uGCGCCAAGcGccuGUgGCGCCGCGCgcauCCGg -3' miRNA: 3'- -UGCGGUUC-Cuu-CA-CGCGGUGCG----GGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 29167 | 0.69 | 0.270296 |
Target: 5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3' miRNA: 3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 35200 | 0.69 | 0.270296 |
Target: 5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3' miRNA: 3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 35079 | 0.69 | 0.2772 |
Target: 5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3' miRNA: 3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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