Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 33556 | 0.67 | 0.379819 |
Target: 5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3' miRNA: 3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 36096 | 0.67 | 0.371081 |
Target: 5'- gGCGCUuuggcuGGGgcGgaacGCGCCGCGuCuuGCa -3' miRNA: 3'- -UGCGGu-----UCCuuCa---CGCGGUGC-GggCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 35038 | 0.67 | 0.362481 |
Target: 5'- -aGCUGGuGGAAG-GuCGCCGCgguGCCCGCc -3' miRNA: 3'- ugCGGUU-CCUUCaC-GCGGUG---CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 6661 | 0.67 | 0.362481 |
Target: 5'- cGCGCuCAuGGuc-UGCGCCACGCCg-- -3' miRNA: 3'- -UGCG-GUuCCuucACGCGGUGCGGgcg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 38581 | 0.67 | 0.357388 |
Target: 5'- gGCGgCGAGGugcgcaAAGUGCGCUggauuggucgcaacgGCGCCCcCg -3' miRNA: 3'- -UGCgGUUCC------UUCACGCGG---------------UGCGGGcG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 22547 | 0.67 | 0.35402 |
Target: 5'- -gGCCAAGaAGGcGCGCgACGCCUucgGCa -3' miRNA: 3'- ugCGGUUCcUUCaCGCGgUGCGGG---CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 5808 | 0.67 | 0.35402 |
Target: 5'- aGCGCCAGcGGAuagucgggcauGGcGUGCCGCaGCaCCGUg -3' miRNA: 3'- -UGCGGUU-CCU-----------UCaCGCGGUG-CG-GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18762 | 0.67 | 0.35402 |
Target: 5'- cCGaCCGAGGGucgccuGGUGCaGUUGCuGCCCGCc -3' miRNA: 3'- uGC-GGUUCCU------UCACG-CGGUG-CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 41951 | 0.67 | 0.352345 |
Target: 5'- cUGCCGAGGcauccgaccGCGacaGCGCCCGCa -3' miRNA: 3'- uGCGGUUCCuuca-----CGCgg-UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 590 | 0.67 | 0.3457 |
Target: 5'- cUGCuCGGGGuAGUGCuucGCCAUGUCgGCg -3' miRNA: 3'- uGCG-GUUCCuUCACG---CGGUGCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 16796 | 0.67 | 0.3457 |
Target: 5'- uCGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3' miRNA: 3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 10468 | 0.67 | 0.337521 |
Target: 5'- uCGCCcuGGAAGUcGCGCagCACcgGCCCGa -3' miRNA: 3'- uGCGGuuCCUUCA-CGCG--GUG--CGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 25184 | 0.67 | 0.337521 |
Target: 5'- uUGCCGaacgguuggAGGggGUGaUGuCCaACGUCCGCg -3' miRNA: 3'- uGCGGU---------UCCuuCAC-GC-GG-UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 32614 | 0.67 | 0.337521 |
Target: 5'- cGCGUCAAGGGccgcGaCGCCGCGgUCGCu -3' miRNA: 3'- -UGCGGUUCCUuca-C-GCGGUGCgGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 26088 | 0.68 | 0.329483 |
Target: 5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3' miRNA: 3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23181 | 0.68 | 0.329483 |
Target: 5'- gACGCCGA-GAAGUucauGgGCCugACGCCgCGCu -3' miRNA: 3'- -UGCGGUUcCUUCA----CgCGG--UGCGG-GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18480 | 0.68 | 0.326308 |
Target: 5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3' miRNA: 3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 40378 | 0.68 | 0.321588 |
Target: 5'- gACcCCGAGGAAuuGcGCGCCGuguucuauCGCCUGCg -3' miRNA: 3'- -UGcGGUUCCUU--CaCGCGGU--------GCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 6972 | 0.68 | 0.313835 |
Target: 5'- uGCGCaacucguugauuCGcGGAAGcGCGuCCGCGCCCGa -3' miRNA: 3'- -UGCG------------GUuCCUUCaCGC-GGUGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 34595 | 0.68 | 0.313835 |
Target: 5'- uGCGCCu-GGucaucGUGCaGCCGCGCCuCGa -3' miRNA: 3'- -UGCGGuuCCuu---CACG-CGGUGCGG-GCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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