miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 40916 0.68 0.306225
Target:  5'- gGCGCgaaUAAGGGg--GCGCCAUGUCCGa -3'
miRNA:   3'- -UGCG---GUUCCUucaCGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 33577 0.68 0.298756
Target:  5'- gGCGaCCGAGGccaacGCG-CugGCCCGCg -3'
miRNA:   3'- -UGC-GGUUCCuuca-CGCgGugCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 6463 0.68 0.29143
Target:  5'- uCGCCGucgcgcAGGAAcUGCacGCCGCgcagGCCCGCa -3'
miRNA:   3'- uGCGGU------UCCUUcACG--CGGUG----CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 39662 0.68 0.29143
Target:  5'- aACGUCGAGGugucggcAGUGguCGgCACGCCCGa -3'
miRNA:   3'- -UGCGGUUCCu------UCAC--GCgGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 23764 0.69 0.287102
Target:  5'- gGCGCCAccGGGccGaUGCGCCGCGgcuacgaagauggauUCCGUg -3'
miRNA:   3'- -UGCGGU--UCCuuC-ACGCGGUGC---------------GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 35079 0.69 0.2772
Target:  5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3'
miRNA:   3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5'
26569 5' -59.5 NC_005357.1 + 37920 0.69 0.270296
Target:  5'- uGCGCCAAGcGccuGUgGCGCCGCGCgcauCCGg -3'
miRNA:   3'- -UGCGGUUC-Cuu-CA-CGCGGUGCG----GGCg -5'
26569 5' -59.5 NC_005357.1 + 10750 0.69 0.270296
Target:  5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3'
miRNA:   3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 35200 0.69 0.270296
Target:  5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3'
miRNA:   3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5'
26569 5' -59.5 NC_005357.1 + 29167 0.69 0.270296
Target:  5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3'
miRNA:   3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5'
26569 5' -59.5 NC_005357.1 + 33752 0.69 0.250413
Target:  5'- aACGCCGAGGugcGcGCGgCACGCaaugccgaCCGCg -3'
miRNA:   3'- -UGCGGUUCCuu-CaCGCgGUGCG--------GGCG- -5'
26569 5' -59.5 NC_005357.1 + 33530 0.69 0.250413
Target:  5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3'
miRNA:   3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 32468 0.69 0.250413
Target:  5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3'
miRNA:   3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 8173 0.7 0.244059
Target:  5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3'
miRNA:   3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 34273 0.7 0.237839
Target:  5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3'
miRNA:   3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 8295 0.7 0.237839
Target:  5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3'
miRNA:   3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 4570 0.7 0.237839
Target:  5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3'
miRNA:   3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5'
26569 5' -59.5 NC_005357.1 + 24119 0.7 0.231752
Target:  5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3'
miRNA:   3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5'
26569 5' -59.5 NC_005357.1 + 29090 0.7 0.229952
Target:  5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3'
miRNA:   3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 24466 0.7 0.225798
Target:  5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3'
miRNA:   3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.