Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 15006 | 0.78 | 0.061336 |
Target: 5'- cCGCCGGGcGcGGUGCGCCAgGCgCGCg -3' miRNA: 3'- uGCGGUUC-CuUCACGCGGUgCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 42205 | 0.78 | 0.059594 |
Target: 5'- cGCGCCAAugccGAGGUGCGCCAguucgccguguCGCCCGg -3' miRNA: 3'- -UGCGGUUc---CUUCACGCGGU-----------GCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 34995 | 0.83 | 0.026378 |
Target: 5'- cGCGUCGAGGAAGUGU-CCggGCGCCCGCu -3' miRNA: 3'- -UGCGGUUCCUUCACGcGG--UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 28211 | 0.86 | 0.015534 |
Target: 5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3' miRNA: 3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23890 | 1.11 | 0.000187 |
Target: 5'- uACGCCAAGGAAGUGCGCCACGCCCGCg -3' miRNA: 3'- -UGCGGUUCCUUCACGCGGUGCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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