Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 349 | 0.66 | 0.435049 |
Target: 5'- cGCGCagcAGGccGUcCGCCAgGCCCGa -3' miRNA: 3'- -UGCGgu-UCCuuCAcGCGGUgCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 357 | 0.7 | 0.214277 |
Target: 5'- uCGCCGAccauccGGGUGUGCUugGCCUGCc -3' miRNA: 3'- uGCGGUUcc----UUCACGCGGugCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 590 | 0.67 | 0.3457 |
Target: 5'- cUGCuCGGGGuAGUGCuucGCCAUGUCgGCg -3' miRNA: 3'- uGCG-GUUCCuUCACG---CGGUGCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 1358 | 0.71 | 0.187669 |
Target: 5'- cCGCCAaaGGGAuggugacauAGgGCGCCGCGgCCaCGCg -3' miRNA: 3'- uGCGGU--UCCU---------UCaCGCGGUGC-GG-GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 4570 | 0.7 | 0.237839 |
Target: 5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3' miRNA: 3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 5753 | 0.73 | 0.144654 |
Target: 5'- cGCGCCGGGcagcGAGUGCGCCAgggccuugaccaucgUGuCCCGCc -3' miRNA: 3'- -UGCGGUUCc---UUCACGCGGU---------------GC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 5808 | 0.67 | 0.35402 |
Target: 5'- aGCGCCAGcGGAuagucgggcauGGcGUGCCGCaGCaCCGUg -3' miRNA: 3'- -UGCGGUU-CCU-----------UCaCGCGGUG-CG-GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 6295 | 0.66 | 0.388694 |
Target: 5'- gGCGCCGGGGcuuaucuccGGUGCGUgcaagacgcggCGCGuUCCGCc -3' miRNA: 3'- -UGCGGUUCCu--------UCACGCG-----------GUGC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 6463 | 0.68 | 0.29143 |
Target: 5'- uCGCCGucgcgcAGGAAcUGCacGCCGCgcagGCCCGCa -3' miRNA: 3'- uGCGGU------UCCUUcACG--CGGUG----CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 6661 | 0.67 | 0.362481 |
Target: 5'- cGCGCuCAuGGuc-UGCGCCACGCCg-- -3' miRNA: 3'- -UGCG-GUuCCuucACGCGGUGCGGgcg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 6972 | 0.68 | 0.313835 |
Target: 5'- uGCGCaacucguugauuCGcGGAAGcGCGuCCGCGCCCGa -3' miRNA: 3'- -UGCG------------GUuCCUUCaCGC-GGUGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8173 | 0.7 | 0.244059 |
Target: 5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3' miRNA: 3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8295 | 0.7 | 0.237839 |
Target: 5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3' miRNA: 3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8686 | 0.74 | 0.117855 |
Target: 5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3' miRNA: 3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 10468 | 0.67 | 0.337521 |
Target: 5'- uCGCCcuGGAAGUcGCGCagCACcgGCCCGa -3' miRNA: 3'- uGCGGuuCCUUCA-CGCG--GUG--CGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 10750 | 0.69 | 0.270296 |
Target: 5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3' miRNA: 3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 12547 | 0.71 | 0.187669 |
Target: 5'- cAUGCCGGGGggGgugGUGCUAgaccCGUUCGCa -3' miRNA: 3'- -UGCGGUUCCuuCa--CGCGGU----GCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 13189 | 0.66 | 0.388694 |
Target: 5'- gGCGCCcuuGGccG-GCGUugUACGCCUGCa -3' miRNA: 3'- -UGCGGuu-CCuuCaCGCG--GUGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 13556 | 0.66 | 0.41612 |
Target: 5'- uACGCCAgcagcgAGGAcGUgGCGCgGCGCUgGg -3' miRNA: 3'- -UGCGGU------UCCUuCA-CGCGgUGCGGgCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 14229 | 0.66 | 0.388694 |
Target: 5'- -gGCCGAccuGGAcaAG-GCGCCGCaCCUGCu -3' miRNA: 3'- ugCGGUU---CCU--UCaCGCGGUGcGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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