miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 14622 0.72 0.155326
Target:  5'- cGCGCgCGAGGAcgugcugcGGcUGCGCgGCGCgCGCu -3'
miRNA:   3'- -UGCG-GUUCCU--------UC-ACGCGgUGCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 14920 0.66 0.41612
Target:  5'- cGCGCCGA-GAAGcugGCgGCCGaggcCGCCgGCa -3'
miRNA:   3'- -UGCGGUUcCUUCa--CG-CGGU----GCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 15006 0.78 0.061336
Target:  5'- cCGCCGGGcGcGGUGCGCCAgGCgCGCg -3'
miRNA:   3'- uGCGGUUC-CuUCACGCGGUgCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 15884 0.73 0.13919
Target:  5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3'
miRNA:   3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5'
26569 5' -59.5 NC_005357.1 + 16371 0.72 0.164014
Target:  5'- uCGCCGAGcgcauGGAGcGCGCC-CGCCgCGCg -3'
miRNA:   3'- uGCGGUUC-----CUUCaCGCGGuGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 16796 0.67 0.3457
Target:  5'- uCGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3'
miRNA:   3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5'
26569 5' -59.5 NC_005357.1 + 17268 0.66 0.392282
Target:  5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3'
miRNA:   3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 17448 0.66 0.388694
Target:  5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3'
miRNA:   3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5'
26569 5' -59.5 NC_005357.1 + 18480 0.68 0.326308
Target:  5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3'
miRNA:   3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 18561 0.66 0.435049
Target:  5'- cACGUCGGuGGAG----GCCGCGCUCGCg -3'
miRNA:   3'- -UGCGGUU-CCUUcacgCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 18684 0.66 0.388694
Target:  5'- gGCGCCGgcauGGcgcugcuGcGCGCCACcgaggcacugGCCCGCg -3'
miRNA:   3'- -UGCGGUu---CCuu-----CaCGCGGUG----------CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 18762 0.67 0.35402
Target:  5'- cCGaCCGAGGGucgccuGGUGCaGUUGCuGCCCGCc -3'
miRNA:   3'- uGC-GGUUCCU------UCACG-CGGUG-CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 18889 0.7 0.213153
Target:  5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3'
miRNA:   3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 20749 0.75 0.102445
Target:  5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3'
miRNA:   3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 22480 0.66 0.406846
Target:  5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3'
miRNA:   3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 22547 0.67 0.35402
Target:  5'- -gGCCAAGaAGGcGCGCgACGCCUucgGCa -3'
miRNA:   3'- ugCGGUUCcUUCaCGCGgUGCGGG---CG- -5'
26569 5' -59.5 NC_005357.1 + 23181 0.68 0.329483
Target:  5'- gACGCCGA-GAAGUucauGgGCCugACGCCgCGCu -3'
miRNA:   3'- -UGCGGUUcCUUCA----CgCGG--UGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 23468 0.7 0.214277
Target:  5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3'
miRNA:   3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 23764 0.69 0.287102
Target:  5'- gGCGCCAccGGGccGaUGCGCCGCGgcuacgaagauggauUCCGUg -3'
miRNA:   3'- -UGCGGU--UCCuuC-ACGCGGUGC---------------GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 23768 0.66 0.435049
Target:  5'- -gGCCGGGGgcGgGCGaCCGCcCCCGa -3'
miRNA:   3'- ugCGGUUCCuuCaCGC-GGUGcGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.