miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 23890 1.11 0.000187
Target:  5'- uACGCCAAGGAAGUGCGCCACGCCCGCg -3'
miRNA:   3'- -UGCGGUUCCUUCACGCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 24119 0.7 0.231752
Target:  5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3'
miRNA:   3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5'
26569 5' -59.5 NC_005357.1 + 24466 0.7 0.225798
Target:  5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3'
miRNA:   3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 24492 0.66 0.388694
Target:  5'- nCGCC-AGGAAGUcguaggggcugGCGCCcACGCCg-- -3'
miRNA:   3'- uGCGGuUCCUUCA-----------CGCGG-UGCGGgcg -5'
26569 5' -59.5 NC_005357.1 + 24655 0.75 0.108367
Target:  5'- -gGCC-AGGAuGGUGuUGUCGCGCCCGCc -3'
miRNA:   3'- ugCGGuUCCU-UCAC-GCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 25126 0.66 0.41612
Target:  5'- uAUGCCGgaauGGAuGcGCGCCcgcgGCGCCgGCu -3'
miRNA:   3'- -UGCGGUu---CCUuCaCGCGG----UGCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 25184 0.67 0.337521
Target:  5'- uUGCCGaacgguuggAGGggGUGaUGuCCaACGUCCGCg -3'
miRNA:   3'- uGCGGU---------UCCuuCAC-GC-GG-UGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 25291 0.67 0.379819
Target:  5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3'
miRNA:   3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5'
26569 5' -59.5 NC_005357.1 + 26088 0.68 0.329483
Target:  5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3'
miRNA:   3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 28211 0.86 0.015534
Target:  5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3'
miRNA:   3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 29090 0.7 0.229952
Target:  5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3'
miRNA:   3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 29167 0.69 0.270296
Target:  5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3'
miRNA:   3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5'
26569 5' -59.5 NC_005357.1 + 31983 0.66 0.397704
Target:  5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3'
miRNA:   3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5'
26569 5' -59.5 NC_005357.1 + 32468 0.69 0.250413
Target:  5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3'
miRNA:   3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 32614 0.67 0.337521
Target:  5'- cGCGUCAAGGGccgcGaCGCCGCGgUCGCu -3'
miRNA:   3'- -UGCGGUUCCUuca-C-GCGGUGCgGGCG- -5'
26569 5' -59.5 NC_005357.1 + 32884 0.7 0.219973
Target:  5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3'
miRNA:   3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 33135 0.71 0.192747
Target:  5'- uCGCCGAGGAAGUcaauGCGCa--GCCgGUg -3'
miRNA:   3'- uGCGGUUCCUUCA----CGCGgugCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 33214 0.76 0.081678
Target:  5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3'
miRNA:   3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5'
26569 5' -59.5 NC_005357.1 + 33530 0.69 0.250413
Target:  5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3'
miRNA:   3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 33556 0.67 0.379819
Target:  5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3'
miRNA:   3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.