miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 42280 0.76 0.079384
Target:  5'- cCGCCugcgGGGAAGccugGCGCCACGCCguaGCu -3'
miRNA:   3'- uGCGGu---UCCUUCa---CGCGGUGCGGg--CG- -5'
26569 5' -59.5 NC_005357.1 + 42205 0.78 0.059594
Target:  5'- cGCGCCAAugccGAGGUGCGCCAguucgccguguCGCCCGg -3'
miRNA:   3'- -UGCGGUUc---CUUCACGCGGU-----------GCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 41951 0.67 0.352345
Target:  5'- cUGCCGAGGcauccgaccGCGacaGCGCCCGCa -3'
miRNA:   3'- uGCGGUUCCuuca-----CGCgg-UGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 40916 0.68 0.306225
Target:  5'- gGCGCgaaUAAGGGg--GCGCCAUGUCCGa -3'
miRNA:   3'- -UGCG---GUUCCUucaCGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 40378 0.68 0.321588
Target:  5'- gACcCCGAGGAAuuGcGCGCCGuguucuauCGCCUGCg -3'
miRNA:   3'- -UGcGGUUCCUU--CaCGCGGU--------GCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 39662 0.68 0.29143
Target:  5'- aACGUCGAGGugucggcAGUGguCGgCACGCCCGa -3'
miRNA:   3'- -UGCGGUUCCu------UCAC--GCgGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 38854 0.66 0.41612
Target:  5'- -gGCCGcGGAucGGUGUacGCC-CaGCCCGCu -3'
miRNA:   3'- ugCGGUuCCU--UCACG--CGGuG-CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 38581 0.67 0.357388
Target:  5'- gGCGgCGAGGugcgcaAAGUGCGCUggauuggucgcaacgGCGCCCcCg -3'
miRNA:   3'- -UGCgGUUCC------UUCACGCGG---------------UGCGGGcG- -5'
26569 5' -59.5 NC_005357.1 + 38033 0.67 0.379819
Target:  5'- cACGCuCAAGGcccGGcgcgacgGCGCCugGCUgCGCa -3'
miRNA:   3'- -UGCG-GUUCCu--UCa------CGCGGugCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 37920 0.69 0.270296
Target:  5'- uGCGCCAAGcGccuGUgGCGCCGCGCgcauCCGg -3'
miRNA:   3'- -UGCGGUUC-Cuu-CA-CGCGGUGCG----GGCg -5'
26569 5' -59.5 NC_005357.1 + 37268 0.74 0.128112
Target:  5'- uCGCCAAGGgcGUGagcaGCgACGgCCGCc -3'
miRNA:   3'- uGCGGUUCCuuCACg---CGgUGCgGGCG- -5'
26569 5' -59.5 NC_005357.1 + 36796 0.75 0.102445
Target:  5'- -aGCCAccAGcAAGcUGCGCCGCGCCaCGCg -3'
miRNA:   3'- ugCGGU--UCcUUC-ACGCGGUGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 36096 0.67 0.371081
Target:  5'- gGCGCUuuggcuGGGgcGgaacGCGCCGCGuCuuGCa -3'
miRNA:   3'- -UGCGGu-----UCCuuCa---CGCGGUGC-GggCG- -5'
26569 5' -59.5 NC_005357.1 + 35678 0.71 0.202728
Target:  5'- uCGCCAAGGAaaAGUgggGCGCCaaggccgACGCCgUGCu -3'
miRNA:   3'- uGCGGUUCCU--UCA---CGCGG-------UGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 35254 0.66 0.425522
Target:  5'- uGCGUCAGGGcgucAGcGCGUCGgGCCUGg -3'
miRNA:   3'- -UGCGGUUCCu---UCaCGCGGUgCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 35200 0.69 0.270296
Target:  5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3'
miRNA:   3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5'
26569 5' -59.5 NC_005357.1 + 35079 0.69 0.2772
Target:  5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3'
miRNA:   3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5'
26569 5' -59.5 NC_005357.1 + 35038 0.67 0.362481
Target:  5'- -aGCUGGuGGAAG-GuCGCCGCgguGCCCGCc -3'
miRNA:   3'- ugCGGUU-CCUUCaC-GCGGUG---CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 34995 0.83 0.026378
Target:  5'- cGCGUCGAGGAAGUGU-CCggGCGCCCGCu -3'
miRNA:   3'- -UGCGGUUCCUUCACGcGG--UGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 34783 0.66 0.397704
Target:  5'- uACGgCAAGGAGccggcGUGggucgaGCCGCGCCCc- -3'
miRNA:   3'- -UGCgGUUCCUU-----CACg-----CGGUGCGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.