Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 34595 | 0.68 | 0.313835 |
Target: 5'- uGCGCCu-GGucaucGUGCaGCCGCGCCuCGa -3' miRNA: 3'- -UGCGGuuCCuu---CACG-CGGUGCGG-GCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 34273 | 0.7 | 0.237839 |
Target: 5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3' miRNA: 3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33752 | 0.69 | 0.250413 |
Target: 5'- aACGCCGAGGugcGcGCGgCACGCaaugccgaCCGCg -3' miRNA: 3'- -UGCGGUUCCuu-CaCGCgGUGCG--------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33674 | 0.71 | 0.187168 |
Target: 5'- cGCGCgCAAauuccauguugacGGua--GCGCCGCGCCCGCc -3' miRNA: 3'- -UGCG-GUU-------------CCuucaCGCGGUGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33577 | 0.68 | 0.298756 |
Target: 5'- gGCGaCCGAGGccaacGCG-CugGCCCGCg -3' miRNA: 3'- -UGC-GGUUCCuuca-CGCgGugCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33556 | 0.67 | 0.379819 |
Target: 5'- gACGCCAAGGccGaaCGCUAcCGCaCCGUc -3' miRNA: 3'- -UGCGGUUCCuuCacGCGGU-GCG-GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33530 | 0.69 | 0.250413 |
Target: 5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3' miRNA: 3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33214 | 0.76 | 0.081678 |
Target: 5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3' miRNA: 3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33135 | 0.71 | 0.192747 |
Target: 5'- uCGCCGAGGAAGUcaauGCGCa--GCCgGUg -3' miRNA: 3'- uGCGGUUCCUUCA----CGCGgugCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 32884 | 0.7 | 0.219973 |
Target: 5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3' miRNA: 3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 32614 | 0.67 | 0.337521 |
Target: 5'- cGCGUCAAGGGccgcGaCGCCGCGgUCGCu -3' miRNA: 3'- -UGCGGUUCCUuca-C-GCGGUGCgGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 32468 | 0.69 | 0.250413 |
Target: 5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3' miRNA: 3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 31983 | 0.66 | 0.397704 |
Target: 5'- gACGCCAAGG----GCGCCAuUGCCaaGCu -3' miRNA: 3'- -UGCGGUUCCuucaCGCGGU-GCGGg-CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 29167 | 0.69 | 0.270296 |
Target: 5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3' miRNA: 3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 29090 | 0.7 | 0.229952 |
Target: 5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3' miRNA: 3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 28211 | 0.86 | 0.015534 |
Target: 5'- cGCGCCAAGGAAGccGCGCUGCGCCUGa -3' miRNA: 3'- -UGCGGUUCCUUCa-CGCGGUGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 26088 | 0.68 | 0.329483 |
Target: 5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3' miRNA: 3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 25291 | 0.67 | 0.379819 |
Target: 5'- aAUGCCuuGAGGucGUGCgGCCG-GCCCuGCc -3' miRNA: 3'- -UGCGG--UUCCuuCACG-CGGUgCGGG-CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 25184 | 0.67 | 0.337521 |
Target: 5'- uUGCCGaacgguuggAGGggGUGaUGuCCaACGUCCGCg -3' miRNA: 3'- uGCGGU---------UCCuuCAC-GC-GG-UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 25126 | 0.66 | 0.41612 |
Target: 5'- uAUGCCGgaauGGAuGcGCGCCcgcgGCGCCgGCu -3' miRNA: 3'- -UGCGGUu---CCUuCaCGCGG----UGCGGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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