Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 24655 | 0.75 | 0.108367 |
Target: 5'- -gGCC-AGGAuGGUGuUGUCGCGCCCGCc -3' miRNA: 3'- ugCGGuUCCU-UCAC-GCGGUGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 24492 | 0.66 | 0.388694 |
Target: 5'- nCGCC-AGGAAGUcguaggggcugGCGCCcACGCCg-- -3' miRNA: 3'- uGCGGuUCCUUCA-----------CGCGG-UGCGGgcg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 24466 | 0.7 | 0.225798 |
Target: 5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3' miRNA: 3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 24119 | 0.7 | 0.231752 |
Target: 5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3' miRNA: 3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23890 | 1.11 | 0.000187 |
Target: 5'- uACGCCAAGGAAGUGCGCCACGCCCGCg -3' miRNA: 3'- -UGCGGUUCCUUCACGCGGUGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23768 | 0.66 | 0.435049 |
Target: 5'- -gGCCGGGGgcGgGCGaCCGCcCCCGa -3' miRNA: 3'- ugCGGUUCCuuCaCGC-GGUGcGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23764 | 0.69 | 0.287102 |
Target: 5'- gGCGCCAccGGGccGaUGCGCCGCGgcuacgaagauggauUCCGUg -3' miRNA: 3'- -UGCGGU--UCCuuC-ACGCGGUGC---------------GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23468 | 0.7 | 0.214277 |
Target: 5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3' miRNA: 3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 23181 | 0.68 | 0.329483 |
Target: 5'- gACGCCGA-GAAGUucauGgGCCugACGCCgCGCu -3' miRNA: 3'- -UGCGGUUcCUUCA----CgCGG--UGCGG-GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 22547 | 0.67 | 0.35402 |
Target: 5'- -gGCCAAGaAGGcGCGCgACGCCUucgGCa -3' miRNA: 3'- ugCGGUUCcUUCaCGCGgUGCGGG---CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 22480 | 0.66 | 0.406846 |
Target: 5'- gGCGgaaCCAGGGgcGggcuggGCugGUCAUGCCCGCc -3' miRNA: 3'- -UGC---GGUUCCuuCa-----CG--CGGUGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 20749 | 0.75 | 0.102445 |
Target: 5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3' miRNA: 3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18889 | 0.7 | 0.213153 |
Target: 5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3' miRNA: 3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18762 | 0.67 | 0.35402 |
Target: 5'- cCGaCCGAGGGucgccuGGUGCaGUUGCuGCCCGCc -3' miRNA: 3'- uGC-GGUUCCU------UCACG-CGGUG-CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18684 | 0.66 | 0.388694 |
Target: 5'- gGCGCCGgcauGGcgcugcuGcGCGCCACcgaggcacugGCCCGCg -3' miRNA: 3'- -UGCGGUu---CCuu-----CaCGCGGUG----------CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18561 | 0.66 | 0.435049 |
Target: 5'- cACGUCGGuGGAG----GCCGCGCUCGCg -3' miRNA: 3'- -UGCGGUU-CCUUcacgCGGUGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 18480 | 0.68 | 0.326308 |
Target: 5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3' miRNA: 3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 17448 | 0.66 | 0.388694 |
Target: 5'- cCGCCAGcaucGAGGccagGUGCCACGCCaggGCc -3' miRNA: 3'- uGCGGUUc---CUUCa---CGCGGUGCGGg--CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 17268 | 0.66 | 0.392282 |
Target: 5'- -aGCCGGGGAuauugccguccacgaAGccgGCGCCGCggGCgCGCa -3' miRNA: 3'- ugCGGUUCCU---------------UCa--CGCGGUG--CGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 16796 | 0.67 | 0.3457 |
Target: 5'- uCGCCGAGGuGGacGCGCUgcugGCGaCCGCg -3' miRNA: 3'- uGCGGUUCCuUCa-CGCGG----UGCgGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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