miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 26088 0.68 0.329483
Target:  5'- gGCGggccucaauCCAGuGGuacaccGUGCGCCAUGCCgGCa -3'
miRNA:   3'- -UGC---------GGUU-CCuu----CACGCGGUGCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 32468 0.69 0.250413
Target:  5'- cUGCCGAGGuGGggGCgGCCgauGCGCCCGa -3'
miRNA:   3'- uGCGGUUCCuUCa-CG-CGG---UGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 10750 0.69 0.270296
Target:  5'- uCGCCAAGGGc--GCGCUcgACuucgGCCCGCa -3'
miRNA:   3'- uGCGGUUCCUucaCGCGG--UG----CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 37920 0.69 0.270296
Target:  5'- uGCGCCAAGcGccuGUgGCGCCGCGCgcauCCGg -3'
miRNA:   3'- -UGCGGUUC-Cuu-CA-CGCGGUGCG----GGCg -5'
26569 5' -59.5 NC_005357.1 + 35079 0.69 0.2772
Target:  5'- gACGCCGAGGucGaG-GCCGCGCUCa- -3'
miRNA:   3'- -UGCGGUUCCuuCaCgCGGUGCGGGcg -5'
26569 5' -59.5 NC_005357.1 + 23764 0.69 0.287102
Target:  5'- gGCGCCAccGGGccGaUGCGCCGCGgcuacgaagauggauUCCGUg -3'
miRNA:   3'- -UGCGGU--UCCuuC-ACGCGGUGC---------------GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 39662 0.68 0.29143
Target:  5'- aACGUCGAGGugucggcAGUGguCGgCACGCCCGa -3'
miRNA:   3'- -UGCGGUUCCu------UCAC--GCgGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 34595 0.68 0.313835
Target:  5'- uGCGCCu-GGucaucGUGCaGCCGCGCCuCGa -3'
miRNA:   3'- -UGCGGuuCCuu---CACG-CGGUGCGG-GCg -5'
26569 5' -59.5 NC_005357.1 + 6972 0.68 0.313835
Target:  5'- uGCGCaacucguugauuCGcGGAAGcGCGuCCGCGCCCGa -3'
miRNA:   3'- -UGCG------------GUuCCUUCaCGC-GGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 24119 0.7 0.231752
Target:  5'- cGCGCguAGGGgucguAGUccagccggcugcGCGCCugGCCCaGCg -3'
miRNA:   3'- -UGCGguUCCU-----UCA------------CGCGGugCGGG-CG- -5'
26569 5' -59.5 NC_005357.1 + 29090 0.7 0.229952
Target:  5'- gGCGCCGAGGucaggcccGUGCgggacuugcugccgGUCACGCgCGCg -3'
miRNA:   3'- -UGCGGUUCCuu------CACG--------------CGGUGCGgGCG- -5'
26569 5' -59.5 NC_005357.1 + 24466 0.7 0.225798
Target:  5'- gACGCCGAcGAccUGCuGCUugGCCUGCg -3'
miRNA:   3'- -UGCGGUUcCUucACG-CGGugCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 36796 0.75 0.102445
Target:  5'- -aGCCAccAGcAAGcUGCGCCGCGCCaCGCg -3'
miRNA:   3'- ugCGGU--UCcUUC-ACGCGGUGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 20749 0.75 0.102445
Target:  5'- gGCGCCGuaGAGGcgcUGCGCCGCGCUCGa -3'
miRNA:   3'- -UGCGGUucCUUC---ACGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 24655 0.75 0.108367
Target:  5'- -gGCC-AGGAuGGUGuUGUCGCGCCCGCc -3'
miRNA:   3'- ugCGGuUCCU-UCAC-GCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 37268 0.74 0.128112
Target:  5'- uCGCCAAGGgcGUGagcaGCgACGgCCGCc -3'
miRNA:   3'- uGCGGUUCCuuCACg---CGgUGCgGGCG- -5'
26569 5' -59.5 NC_005357.1 + 33674 0.71 0.187168
Target:  5'- cGCGCgCAAauuccauguugacGGua--GCGCCGCGCCCGCc -3'
miRNA:   3'- -UGCG-GUU-------------CCuucaCGCGGUGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 35678 0.71 0.202728
Target:  5'- uCGCCAAGGAaaAGUgggGCGCCaaggccgACGCCgUGCu -3'
miRNA:   3'- uGCGGUUCCU--UCA---CGCGG-------UGCGG-GCG- -5'
26569 5' -59.5 NC_005357.1 + 23468 0.7 0.214277
Target:  5'- cACGCCGgcguGGAacaGGUGCGCCGugggaaucuCGaCCUGCg -3'
miRNA:   3'- -UGCGGUu---CCU---UCACGCGGU---------GC-GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 32884 0.7 0.219973
Target:  5'- cGCGCCcgacuGGAAGgacaacaagaacUGCgGCCACGgCCUGCa -3'
miRNA:   3'- -UGCGGuu---CCUUC------------ACG-CGGUGC-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.