Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26569 | 5' | -59.5 | NC_005357.1 | + | 4570 | 0.7 | 0.237839 |
Target: 5'- uCGCCGAGGcgcugcucGGUGCGCCAgGCgaggaaCUGCu -3' miRNA: 3'- uGCGGUUCCu-------UCACGCGGUgCG------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8295 | 0.7 | 0.237839 |
Target: 5'- cUGCCGGGGcAGUGCaGCCAgcggUGCgCGCu -3' miRNA: 3'- uGCGGUUCCuUCACG-CGGU----GCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 34273 | 0.7 | 0.237839 |
Target: 5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3' miRNA: 3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8173 | 0.7 | 0.244059 |
Target: 5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3' miRNA: 3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33752 | 0.69 | 0.250413 |
Target: 5'- aACGCCGAGGugcGcGCGgCACGCaaugccgaCCGCg -3' miRNA: 3'- -UGCGGUUCCuu-CaCGCgGUGCG--------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33530 | 0.69 | 0.250413 |
Target: 5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3' miRNA: 3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 29167 | 0.69 | 0.270296 |
Target: 5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3' miRNA: 3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 35200 | 0.69 | 0.270296 |
Target: 5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3' miRNA: 3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 1358 | 0.71 | 0.187669 |
Target: 5'- cCGCCAaaGGGAuggugacauAGgGCGCCGCGgCCaCGCg -3' miRNA: 3'- uGCGGU--UCCU---------UCaCGCGGUGC-GG-GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 12547 | 0.71 | 0.187669 |
Target: 5'- cAUGCCGGGGggGgugGUGCUAgaccCGUUCGCa -3' miRNA: 3'- -UGCGGUUCCuuCa--CGCGGU----GCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 34995 | 0.83 | 0.026378 |
Target: 5'- cGCGUCGAGGAAGUGU-CCggGCGCCCGCu -3' miRNA: 3'- -UGCGGUUCCUUCACGcGG--UGCGGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 42205 | 0.78 | 0.059594 |
Target: 5'- cGCGCCAAugccGAGGUGCGCCAguucgccguguCGCCCGg -3' miRNA: 3'- -UGCGGUUc---CUUCACGCGGU-----------GCGGGCg -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 15006 | 0.78 | 0.061336 |
Target: 5'- cCGCCGGGcGcGGUGCGCCAgGCgCGCg -3' miRNA: 3'- uGCGGUUC-CuUCACGCGGUgCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 42280 | 0.76 | 0.079384 |
Target: 5'- cCGCCugcgGGGAAGccugGCGCCACGCCguaGCu -3' miRNA: 3'- uGCGGu---UCCUUCa---CGCGGUGCGGg--CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 33214 | 0.76 | 0.081678 |
Target: 5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3' miRNA: 3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 8686 | 0.74 | 0.117855 |
Target: 5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3' miRNA: 3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 15884 | 0.73 | 0.13919 |
Target: 5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3' miRNA: 3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 5753 | 0.73 | 0.144654 |
Target: 5'- cGCGCCGGGcagcGAGUGCGCCAgggccuugaccaucgUGuCCCGCc -3' miRNA: 3'- -UGCGGUUCc---UUCACGCGGU---------------GC-GGGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 14622 | 0.72 | 0.155326 |
Target: 5'- cGCGCgCGAGGAcgugcugcGGcUGCGCgGCGCgCGCu -3' miRNA: 3'- -UGCG-GUUCCU--------UC-ACGCGgUGCGgGCG- -5' |
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26569 | 5' | -59.5 | NC_005357.1 | + | 16371 | 0.72 | 0.164014 |
Target: 5'- uCGCCGAGcgcauGGAGcGCGCC-CGCCgCGCg -3' miRNA: 3'- uGCGGUUC-----CUUCaCGCGGuGCGG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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